Seafloor video footage and still-frame grabs from U.S. Geological Survey cruises in Hawaiian nearshore waters
Ann E. Gibbs, Susan A. Cochran, Peter W. Tierney
2013, Data Series 735
Underwater video footage was collected in nearshore waters (<60-meter depth) off the Hawaiian Islands from 2002 to 2011 as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Pacific Coral Reef Project, to improve seafloor characterization and for the development and ground-truthing of benthic-habitat maps. This report...
Temporal shifts in top-down vs. bottom-up control of epiphytic algae in a seagrass ecosystem
Matthew A. Whalen, J. Emmett Duffy, James B. Grace
2013, Ecology (94) 510-520
In coastal marine food webs, small invertebrate herbivores (mesograzers) have long been hypothesized to occupy an important position facilitating dominance of habitat-forming macrophytes by grazing competitively superior epiphytic algae. Because of the difficulty of manipulating mesograzers in the field, however, their impacts on community organization have rarely been rigorously documented....
Representing the acquisition and use of energy by individuals in agent-based models of animal populations
Richard M. Sibly, Volker Grimm, Benjamin T. Martin, Alice Johnston, Katarzyna Kulakowska, Christopher J. Topping, Peter Calow, Jacob Nabe-Nielsen, Pernille Thorbek, Donald L. DeAngelis
2013, Methods in Ecology and Evolution (4) 151-161
1. Agent-based models (ABMs) are widely used to predict how populations respond to changing environments. As the availability of food varies in space and time, individuals should have their own energy budgets, but there is no consensus as to how these should be modelled. Here, we use knowledge of physiological...
Trait contributions to fish community assembly emerge from trophicinteractions in an individual-based model
Henrique C. Giacomini, Donald DeAngelis, Joel C. Trexler, Miguel Petrere Jr.
2013, Ecological Modelling (251) 32-43
Community ecology seeks to understand and predict the characteristics of communities that can develop under different environmental conditions, but most theory has been built on analytical models that are limited in the diversity of species traits that can be considered simultaneously. We address that limitation with an individual-based model to...
Deep subsurface drip irrigation using coal-bed sodic water: part II. geochemistry
Carleton R. Bern, George N. Breit, Richard W. Healy, John W. Zupancic
2013, Agricultural Water Management (118) 135-149
Waters with low salinity and high sodium adsorption ratios (SARs) present a challenge to irrigation because they degrade soil structure and infiltration capacity. In the Powder River Basin of Wyoming, such low salinity (electrical conductivity, EC 2.1 mS cm-1) and high-SAR (54) waters are co-produced with coal-bed methane and some...
Deep subsurface drip irrigation using coal-bed sodic water: part I. water and solute movement
Carleton R. Bern, George N. Breit, Richard W. Healy, John W. Zupancic, Richard Hammack
2013, Agricultural Water Management (118) 122-134
Water co-produced with coal-bed methane (CBM) in the semi-arid Powder River Basin of Wyoming and Montana commonly has relatively low salinity and high sodium adsorption ratios that can degrade soil permeability where used for irrigation. Nevertheless, a desire to derive beneficial use from the water and a need to dispose...
Summary of 2012 reconnaissance field studies related to the petroleum geology of the Nenana Basin, interior Alaska
Marwan A. Wartes, Robert J. Gillis, Trystan M. Herriott, Richard G. Stanley, Kenneth P. Helmold, C. Shaun Peterson, Jeffrey A. Benowitz
2013, Alaska Division of Geological & Geophysical Surveys Preliminary Interpretive Report 2013-2
The Alaska Division of Geological & Geophysical Surveys (DGGS) recently initiated a multi-year review of the hydrocarbon potential of frontier sedimentary basins in Alaska (Swenson and others, 2012). In collaboration with the Alaska Division of Oil & Gas and the U.S. Geological Survey we conducted reconnaissance field studies in two...
Modeling plant species distributions under future climates: how fine scale do climate projections need to be?
Janet Franklin, Frank W. Davis, Makihiko Ikegami, Alexandra D. Syphard, Lorraine E. Flint, Alan L. Flint, Lee Hannah
2013, Global Change Biology (19) 473-483
Recent studies suggest that species distribution models (SDMs) based on fine‐scale climate data may provide markedly different estimates of climate‐change impacts than coarse‐scale models. However, these studies disagree in their conclusions of how scale influences projected species distributions. In rugged terrain, coarse‐scale climate grids may not capture topographically controlled climate...
Hydrocarbon-bearing sandstone in the Upper Jurassic Naknek Formation on the south shore of Kamishak Bay
Richard G. Stanley, Trystan M. Herriott, Kenneth P. Helmold, Robert J. Gillis, Paul G. Lillis
2013, Alaska Division of Geological & Geophysical Surveys Preliminary Interpretive Report 2013-1E
The presence of an active petroleum system in Kamishak Bay is demonstrated by an outcrop of hydrocarbon-bearing sandstone in the Upper Jurassic Naknek Formation near the south shore of the bay (fig. 1). The outcrop is about 140 km southwest of Homer on a small, unnamed island near the mouth...
Reconnaissance studies of potential petroleum source rocks in the Middle Jurassic Tuxedni Group near Red Glacier, eastern slope of Iliamna Volcano
Richard G. Stanley, Trystan M. Herriott, David L. LePain, Kenneth P. Helmold, C. Shaun Peterson
2013, Alaska Division of Geological & Geophysical Surveys Preliminary Interpretive Report 2013-1B
Previous geological and organic geochemical studies have concluded that organic-rich marine shale in the Middle Jurassic Tuxedni Group is the principal source rock of oil and associated gas in Cook Inlet (Magoon and Anders, 1992; Magoon, 1994; Lillis and Stanley, 2011; LePain and others, 2012; LePain and others, submitted). During...
Dynamics of seabird colonies vulnerable to sea-level rise at French Frigate Shoals, Hawai`i
Michelle H. Reynolds, Karen N. Courtot, Crystal M. Krause, Nathaniel E. Seavy, Paula Hartzell, Jeff S. Hatfield
2013, Hawai‘i Cooperative Studies Unit Technical Report HCSU-037
Globally, seabirds are vulnerable to anthropogenic threats both at sea and on land. Seabirds typically nest colonially and show strong site fidelity; therefore, conservation strategies could benefit from an understanding of the population dynamics and vulnerability of breeding colonies to climate change. More than 350 atolls exist across the Pacific...
Ecosystem engineering varies spatially: a test of the vegetation modification paradigm for prairie dogs
Bruce W. Baker, David J. Augustine, James A. Sedgwick, Bruce C. Lubow
2013, Ecography: Pattern and Diversity in Ecology (36) 230-239
Colonial, burrowing herbivores can be engineers of grassland and shrubland ecosystems worldwide. Spatial variation in landscapes suggests caution when extrapolating single-place studies of single species, but lack of data and the need to generalize often leads to ‘model system’ thinking and application of results beyond appropriate statistical inference. Generalizations about...
Environmental factors that influence cyanobacteria and geosmin occurrence in reservoirs
Celeste A. Journey, Karen M. Beaulieu, Paul M. Bradley
2013, Book chapter, Current perspectives in contaminant hydrology and water resources sustainability
Phytoplankton are small to microscopic, free-floating algae that inhabit the open water of freshwater, estuarine, and saltwater systems. In freshwater lake and reservoirs systems, which are the focus of this chapter, phytoplankton communities commonly consist of assemblages of the major taxonomic groups, including green algae, diatoms, dinoflagellates, and cyanobacteria. Cyanobacteria...
Preliminary stratigraphy and facies analysis of the Upper Cretaceous Kaguyak Formation, including a brief summary of newly discovered oil stain, upper Alaska Peninsula
Marwan A. Wartes, Paul L. Decker, Richard G. Stanley, Trystan M. Herriott, Kenneth P. Helmold, Robert J. Gillis
2013, Alaska Division of Geological & Geophysical Surveys Preliminary Interpretive Report 2013-1F
The Alaska Division of Geological and Geophysical Surveys has an ongoing program aimed at evaluating the Mesozoic forearc stratigraphy, structure, and petroleum systems of lower Cook Inlet. Most of our field studies have focused on the Jurassic component of the petroleum system[this report.] However, in late July and early August...
Structural design of Kaohsiung Stadium, Taiwan
Hideyuki Watanabe, Yoshiro Tanno, Masayoshi Nakai, Takashi Ohshima, Akihiro Suguichi, William H. Lee, Jensen Wang
2013, Structural Engineering International (23) 75-79
This paper presents an outline description of the structural design of the main stadium for the World Games held in Kaohsiung City, Taiwan, in 2009. Three new design concepts, unseen in previous stadiums, were proposed and realized: “an open stadium”, “an urban park”, and “a spiral continuous form”. Based on...
Integration of bed characteristics, geochemical tracers, current measurements, and numerical modeling for assessing the provenance of beach sand in the San Francisco Bay Coastal System
Patrick L. Barnard, Amy C. Foxgrover, Edwin P.L. Elias, Li H. Erikson, James R. Hein, Mary McGann, Kira Mizell, Robert J. Rosenbauer, Peter W. Swarzenski, Renee K. Takesue, Florence L. Wong, Don Woodrow
2013, Marine Geology (345) 181-206
Over 150 million m3 of sand-sized sediment has disappeared from the central region of the San Francisco Bay Coastal System during the last half century. This enormous loss may reflect numerous anthropogenic influences, such as watershed damming, bay-fill development, aggregate mining, and dredging. The reduction in Bay sediment also appears to be...
Regional contingencies in the relationship between aboveground Bbomass and litter in the world’s grasslands
Lydia R. O’Halloran, Elizabeth T. Borer, Eric W. Seabloom, Andrew S. MacDougall, Elsa E. Cleland, Rebecca L. McCulley, Sarah Hobbie, W. Stan Harpole, Nicole M. DeCrappeo, Cheng-Jin Chu, Jonathan D. Bakker, Kendi F. Davies, Guozhen Du, Jennifer Firn, Nicole Hagenah, Kirsten S. Hofmockel, Johannes M.H. Knops, Wei Li, Brett A. Melbourne, John W. Morgan, John L. Orrock, Suzanne M. Prober, Carly J. Stevens
2013, PLoS ONE (8)
Based on regional-scale studies, aboveground production and litter decomposition are thought to positively covary, because they are driven by shared biotic and climatic factors. Until now we have been unable to test whether production and decomposition are generally coupled across climatically dissimilar regions, because we lacked replicated data collected within...
The effect of coachwhip presence on body size of North American racers suggests competition between these sympatric snakes
David A. Steen, Christopher J.W. McClure, Lora L. Smith, Brian J. Halstead, C. Kenneth Dodd Jr., William B. Sutton, James R. Lee, Danna L. Baxley, W. Jeffrey Humphries, Craig Guyer
2013, Journal of Zoology (289) 86-93
When sympatric species compete, character divergence may help maintain coexistence. Snakes are often found in species-rich assemblages while exploiting similar resources; because snake body size is a relatively plastic trait that determines the range of prey sizes an individual may consume, divergence in body size between sympatric species may arise...
VisTrails SAHM: visualization and workflow management for species habitat modeling
Jeffrey T. Morisette, Catherine S. Jarnevich, Tracy R. Holcombe, Colin B. Talbert, Drew A. Ignizio, Marian Talbert, Claudio Silva, David Koop, Alan Swanson, Nicholas E. Young
2013, Ecography: Pattern and Diversity in Ecology (36) 129-135
The Software for Assisted Habitat Modeling (SAHM) has been created to both expedite habitat modeling and help maintain a record of the various input data, pre- and post-processing steps and modeling options incorporated in the construction of a species distribution model through the established workflow management and visualization VisTrails software....
Intercontinental dispersal of bacteria and archaea by transpacific winds
D. Smith, H. Timonen, D. Jaffe, Dale W. Griffin, M. Birmele, K.D. Perry, P.D. Ward, M. Roberts
2013, Applied and Environmental Microbiology (79) 1134-1139
Microorganisms are abundant in the upper atmosphere, particularly downwind of arid regions, where winds can mobilize large amounts of topsoil and dust. However, the challenge of collecting samples from the upper atmosphere and reliance upon culture-based characterization methods have prevented a comprehensive understanding of globally dispersed airborne microbes. In spring...
Valuing morbidity from wildfire smoke exposure: a comparison of revealed and stated preference techniques
Leslie Richardson, John B. Loomis, Patricia A. Champ
2013, Land Economics (89) 76-100
Estimating the economic benefits of reduced health damages due to improvements in environmental quality continues to challenge economists. We review welfare measures associated with reduced wildfire smoke exposure, and a unique dataset from California’s Station Fire of 2009 allows for a comparison of cost of illness (COI) estimates with willingness...
Consumption of freshwater bivalves by muskrats in the Green River, Kentucky
Kimberly Asmus Hersey, Joseph D. Clark, James B. Layzer
2013, American Midland Naturalist (170) 248-259
Muskrats (Ondatra zibethicus) are known to prey on freshwater bivalves (mussels and clams) and can negatively impact imperiled mussel species. However, factors that influence muskrat predation on bivalves are poorly understood. We evaluated the feeding ecology of muskrats in the Green River, Kentucky, by using stable isotope analysis of muskrat...
Monitoring the status of forests and rangelands in the Western United States using ecosystem performance anomalies
Matthew B. Rigge, Bruce Wylie, Yingxin Gu, Jayne Belnap, Khem P. Phuyal, Larry Tieszen
2013, International Journal of Remote Sensing (34) 4049-4068
The effects of land management and disturbance on ecosystem performance (i.e. biomass production) are often confounded by those of weather and site potential. The current study overcomes this issue by calculating the difference between actual and expected ecosystem performance (EEP) to generate ecosystem performance anomalies (EPA). This study aims to...
Volatile fluxes through the Big Bend section of the San Andreas Fault, California: helium and carbon-dioxide systematics
Justin T. Kulongoski, David R. Hilton, Peter H. Barry, Bradley K. Esser, Darren Hillegonds, Kenneth Belitz
2013, Chemical Geology (339) 92-102
To investigate the source of volatiles and their relationship to the San Andreas Fault System (SAFS), 18 groundwater samples were collected from wells near the Big Bend section of the SAFS in southern California and analyzed for helium and carbon abundance and isotopes. Concentrations of 4He, corrected for air-bubble entrainment,...
Temporal and spatial distribution of alteration, mineralization and fluid inclusions in the transitional high-sulfidation epithermal-porphyry copper system at Red Mountain, Arizona
Pilar Lecumberri-Sanchez, M. Claiborne Newton III, Erik C. Westman, Robert J. Kamilli, Vertrees M. Canby, Robert J. Bodnar
2013, Journal of Geochemical Exploration (125) 80-93
Red Mountain, Arizona, is a Laramide porphyry Cu system (PCD) that has experienced only a modest level of erosion compared to most other similar deposits in the southwestern United States. As a result, the upper portion of the magmatic–hydrothermal system, which represents the transition from shallower high-sulfidation epithermal mineralization to...
