A terrestrial lidar-based workflow for determining three-dimensional slip vectors and associated uncertainties
Peter O. Gold, Eric Cowgill, Oliver Kreylos, Ryan D. Gold
2012, Geosphere (8) 431-442
Three-dimensional (3D) slip vectors recorded by displaced landforms are difficult to constrain across complex fault zones, and the uncertainties associated with such measurements become increasingly challenging to assess as landforms degrade over time. We approach this problem from a remote sensing perspective by using terrestrial laser scanning (TLS) and 3D...
A Gibbs sampler for Bayesian analysis of site-occupancy data
Robert M. Dorazio, Daniel Taylor Rodriguez
2012, Methods in Ecology and Evolution (3) 1093-1098
1. A Bayesian analysis of site-occupancy data containing covariates of species occurrence and species detection probabilities is usually completed using Markov chain Monte Carlo methods in conjunction with software programs that can implement those methods for any statistical model, not just site-occupancy models. Although these software programs are quite flexible, considerable...
Post-fire land treatments and wind erosion -- lessons from the Milford Flat Fire, UT, USA
Mark E. Miller, Matthew A. Bowker, Richard L. Reynolds, Harland L. Goldstein
2012, Aeolian Research (7) 29-44
We monitored sediment flux at 25 plots located at the northern end of the 2007 Milford Flat Fire (Lake Bonneville Basin, west-central Utah) to examine the effectiveness of post-fire rehabilitation treatments in mitigating risks of wind erosion during the first 3 years post fire. Maximum values were recorded during Mar–Jul...
History and progress of the North American Soil Geochemical Landscapes Project, 2001-2010
David B. Smith, William F. Cannon, Laurel G. Woodruff, Francisco Moreira Rivera, Andrew N. Rencz, Robert G. Garrett
2012, Earth Science Frontiers (19) 19-32
In 2007, the U.S. Geological Survey, the Geological Survey of Canada, and the Mexican Geological Survey initiated a low-density (1 site per 1600 km2, 13323 sites) geochemical and mineralogical survey of North American soils (North American Soil Geochemical Landscapes Project). Sampling and analytical protocols were developed at a series of...
Ecology of bison, elk, and vegetation in an arid ecosystem
Kathryn A. Schoenecker
2012, Thesis
Herbivory has profound effects on vegetation production and structure in many different plant communities. The influence of herbivory on plants and ultimately ecosystem processes is shaped by the types of plants consumed, the intensity of herbivory, the evolutionary history of grazing, and the availability of water and nutrients to plants....
Current and potential sustainable corn stover feedstock for biofuel production in the United States
Zhengxi Tan, Shu-Guang Liu, Larry L. Tieszen, Norman Bliss
2012, Biomass and Bioenergy (47) 372-386
Increased demand for corn (Zea mays L.) stover as a feedstock for cellulosic ethanol raises concerns about agricultural sustainability. Excessive corn stover harvesting could have long-term impacts on soil quality. We estimated current and future stover production and evaluated the potential harvestable stover amount (HSA) that could be used for biofuel...
Glass wool filters for concentrating waterborne viruses and agricultural zoonotic pathogens
Hana T. Millen, Jordan C. Gonnering, Ryan K. Berg, Susan K. Spencer, William E. Jokela, John M. Pearce, Jackson S. Borchardt, Mark A. Borchardt
2012, Journal of Visualized Experiments (61)
The key first step in evaluating pathogen levels in suspected contaminated water is concentration. Concentration methods tend to be specific for a particular pathogen group, for example US Environmental Protection Agency Method 1623 for Giardia and Cryptosporidium1, which means multiple methods are required if the sampling program is targeting more...
Dwarf char, a new form of chars (the genus Salvelinus) in Lake Kronotskoe
S.D. Pavlov, E.A. Pivovarov, Carl O. Ostberg
2012, Doklady Biological Sciences (442) 20-23
Lake Kronotskoe is situated in the Kronotskii State Nature Reserve and is a unique natural heritage of Kamchatka. The lake–river system of the reserve includes numerous springs and small streams and three large inflowing rivers, Listvennichnaya, Unana, and Uzon, which form the main bays of...
New insights into gill ionocyte and ion transporter function in euryhaline and diadromous fish
Junya Hiroi, Stephen D. McCormick
2012, Respiratory Physiology and Neurobiology (184) 257-268
Teleost fishes are able to acclimatize to seawater by secreting excess NaCl by means of specialized “ionocytes” in the gill epithelium. Antibodies against Na+/K+-ATPase (NKA) have been used since 1996 as a marker for identifying branchial ionocytes. Immunohistochemistry of NKA by itself and in combination with Na+/K+/2Cl− cotransporter and CFTR...
Habitat use and movement patterns of Northern Pintails during spring in northern Japan: the importance of agricultural lands
Noriyuki M. Yamaguchi, Jerry W. Hupp, Paul L. Flint, John M. Pearce, Yusuke Shigeta, Tetsuo Shimada, Emiko N. Hiraoka, Hiroyoshi Higuchi
2012, Journal of Field Ornithology (83) 141-153
From 2006 to 2009, we marked 198 Northern Pintails (Anas acuta) with satellite transmitters on their wintering areas in Japan to study their migration routes and habitat use in spring staging areas. We hypothesized that the distribution of pintails during spring staging was influenced by patterns of land use and...
Drainage network structure and hydrologic behavior of three lake-rich watersheds on the Arctic Coastal Plain, Alaska
C.D. Arp, M.S. Whitman, Benjamin M. Jones, R. Kemnitz, G. Grosse, F.E. Urban
2012, Arctic, Antarctic, and Alpine Research (44) 385-394
Watersheds draining the Arctic Coastal Plain (ACP) of Alaska are dominated by permafrost and snowmelt runoff that create abundant surface storage in the form of lakes, wetlands, and beaded streams. These surface water elements compose complex drainage networks that affect aquatic ecosystem connectivity and hydrologic behavior. The 4676 km2 Fish...
A new basaltic glass microanalytical reference material for multiple techniques
Steve Wilson, Alan Koenig, Heather Lowers
2012, Microscopy Today (20) 12-16
The U.S. Geological Survey (USGS) has been producing reference materials since the 1950s. Over 50 materials have been developed to cover bulk rock, sediment, and soils for the geological community. These materials are used globally in geochemistry, environmental, and analytical laboratories that perform bulk chemistry and/or microanalysis for instrument calibration...
Frictional properties of saponite-rich gouge from a serpentinite-bearing fault zone along the Gokasho-Arashima Tectonic Line, central Japan
Hiroki Sone, Toshihiko Shimamoto, Diane E. Moore
2012, Journal of Structural Geology (38) 172-182
We studied a serpentinite-bearing fault zone in Gokasho-Arashima Tectonic Line, Mie Prefecture, central Japan, characterizing its internal structures, mineral assemblage, permeability, and frictional properties. The fault core situated between the serpentinite breccia and the adjacent sedimentary rocks is characterized by a zone locally altered to saponite. The clayey gouge layer...
Deep Arctic Ocean warming during the last glacial cycle
T. M. Cronin, G. S. Dwyer, J. Farmer, H.A. Bauch, R.F. Spielhagen, M. Jakobsson, J. Nilsson, W. M. Briggs Jr., A. Stepanova
2012, Nature Geoscience (5) 631-634
In the Arctic Ocean, the cold and relatively fresh water beneath the sea ice is separated from the underlying warmer and saltier Atlantic Layer by a halocline. Ongoing sea ice loss and warming in the Arctic Ocean have demonstrated the instability of the halocline, with implications for further sea ice...
ShakeMap Atlas 2.0: an improved suite of recent historical earthquake ShakeMaps for global hazard analyses and loss model calibration
D. Garcia, R.T. Mah, K. L. Johnson, M.G. Hearne, K. D. Marano, K.-W. Lin, D.J. Wald
2012, Conference Paper, The 15th World Conference on Earthquake Engineering: September 24-28, 2012, Lisbon, Portugal
We introduce the second version of the U.S. Geological Survey ShakeMap Atlas, which is an openly-available compilation of nearly 8,000 ShakeMaps of the most significant global earthquakes between 1973 and 2011. This revision of the Atlas includes: (1) a new version of the ShakeMap software that improves data usage and...
Application of radiotelemetry to wildlife conservation in mountainous Asian landscapes
M.S. Mitchell, L.N. Rich, L. S. Mills
2012, Book chapter, Wildlife Research Techniques in Rugged Mountainous Asian Landscapes
An evaluation of a mitigation strategy for deer-vehicle collisions
John A. Bissonette, Silvia Rosa
2012, Wildlife Biology (18) 414-423
High mule deer Odocoileus hemionus mortality in southwestern Utah led to the establishment of a mitigation strategy with two major objectives: 1) reduction of wildlife-vehicle collisions and 2) restoration of landscape connectivity to facilitate wildlife movement across the roaded landscape. During our study, we assessed the effectiveness of the mitigation...
Mapping critical loads of nitrogen deposition for aquatic ecosystems in the Rocky Mountains, USA
Leora Nanus, David W. Clow, Jasmine E. Saros, Verlin C. Stephens, Donald H. Campbell
2012, Environmental Pollution (166) 125-135
Spatially explicit estimates of critical loads of nitrogen (N) deposition (CLNdep) for nutrient enrichment in aquatic ecosystems were developed for the Rocky Mountains, USA, using a geostatistical approach. The lowest CLNdep estimates (−1 yr−1) occurred in high-elevation basins with steep slopes, sparse vegetation, and abundance...
Factors influencing geographic patterns in diversity of forest bird communities of eastern Connecticut, USA
Robert J. Craig, Robert W. Klaver
2012, Ecography (36) 599-609
At regional scales, the most important variables associated with diversity are latitudinally-based temperature and net primary productivity, although diversity is also influenced by habitat. We examined bird species richness, community density and community evenness in forests of eastern Connecticut to determine whether: 1) spatial and seasonal patterns exist in diversity,...
Multiple functions of a multi-component mating pheromone in sea lamprey Petromyzon marinus
N.S. Johnson, S.-S. Yun, T.J. Buchinger, W. Li
2012, Journal of Fish Biology (80) 538-554
The role of the C24 sulphate in the mating pheromone component, 7α,12α,24-trihydroxy-5α-cholan-3-one 24-sulphate (3kPZS), to specifically induce upstream movement in ovulated female sea lampreys Petromyzon marinus was investigated. 7α,12α-dihydroxy-5α-cholan-3-one 24-oic acid (3kACA), a structurally similar bile acid released by spermiated males, but lacking the C24 sulphate ester, was tested in...
Prey selection by the Lake Superior fish community
Edmund J. Isaac, Thomas R. Hrabik, Jason D. Stockwell, Allison E. Gamble
2012, Journal of Great Lakes Research (38) 326-335
Mysis diluviana is an important prey item to the Lake Superior fish community as found through a recent diet study. We further evaluated this by relating the quantity of prey found in fish diets to the quantity of prey available to fish, providing insight into feeding behavior and prey preferences....
Nearshore hydrodynamics as loading and forcing factors for Escherichia coli contamination at an embayed beach
Zhongfu Ge, Richard L. Whitman, Meredith B. Nevers, Mantha S. Phanikumar, Muruleedhara N. Byappanahalli
2012, Limnology and Oceanography (57) 362-381
Numerical simulations of the transport and fate of Escherichia coli were conducted at Chicago's 63rd Street Beach, an embayed beach that had the highest mean E. coli concentration among 23 similar Lake Michigan beaches during summer months of 2000-2005, in order to find the cause for the high bacterial contamination....
Prevalence of Anguillicoloides crassus and growth variation in migrant yellow-phase American eels of the upper Potomac River drainage
Jennifer L. Zimmerman, Stuart A. Welsh
2012, Diseases of Aquatic Organisms (101) 131-137
Prevalence of the non-native swim bladder nematode Anguillicoloides crassus has recently increased in American eels from estuaries of the North American Atlantic coast, but little is known about parasite prevalence or conditions of previous infection in upstream migrant eels within upper watersheds. This study is the first to confirm presence of A....
Downscaling future climate projections to the watershed scale: A north San Francisco Bay estuary case study
Elisabeth Micheli, Lorraine Flint, Alan Flint, Stuart Weiss, Morgan Kennedy
2012, San Francisco Estuary and Watershed Science (10)
We modeled the hydrology of basins draining into the northern portion of the San Francisco Bay Estuary (North San Pablo Bay) using a regional water balance model (Basin Characterization Model; BCM) to estimate potential effects of climate change at the watershed scale. The BCM calculates water balance components, including runoff,...
Fluid‐driven seismicity response of the Rinconada fault near Paso Robles, California, to the 2003 M 6.5 San Simeon earthquake
Jeanne L. Hardebeck
2012, Bulletin of the Seismological Society of America (102) 377-390
The 2003 M 6.5 San Simeon, California, earthquake caused significant damage in the city of Paso Robles and a persistent cluster of aftershocks close to Paso Robles near the Rinconada fault. Given the importance of secondary aftershock triggering in sequences of large events, a concern is whether this cluster of...
