Perspectives: Gene Expression in Fisheries Management
Jennifer L. Nielsen, Scott A. Pavey
2010, Current Zoology (56) 157-174
Functional genes and gene expression have been connected to physiological traits linked to effective production and broodstock selection in aquaculture, selective implications of commercial fish harvest, and adaptive changes reflected in non-commercial fish populations subject to human disturbance and climate change. Gene mapping using single nucleotide polymorphisms (SNPs) to identify...
Pathways for arsenic from sediments to groundwater to streams: Biogeochemical processes in the Inner Coastal Plain, New Jersey, USA
Julia L. Barringer, Adam Mumford, Lily Y. Young, Pamela A. Reilly, Jennifer L. Bonin, Robert Rosman
2010, Water Research (44) 5532-5544
The Cretaceous and Tertiary sediments that underlie the Inner Coastal Plain of New Jersey contain the arsenic-rich mineral glauconite. Streambed sediments in two Inner Coastal Plain streams (Crosswicks and Raccoon Creeks) that traverse these glauconitic deposits are enriched in arsenic (15–25 mg/kg), and groundwater discharging to the streams contains elevated levels...
Parametric study of the physical properties of hydrate‐bearing sand, silt, and clay sediments: 2. Small‐strain mechanical properties
J.Y. Lee, F.M. Francisca, J.C. Santamarina, C. Ruppel
2010, Journal of Geophysical Research (115)
The small‐strain mechanical properties (e.g., seismic velocities) of hydrate‐bearing sediments measured under laboratory conditions provide reference values for calibration of logging and seismic exploration results acquired in hydrate‐bearing formations. Instrumented cells were designed for measuring the compressional (P) and shear (S) velocities of sand, silts, and clay with and without...
The inverse niche model for food webs with parasites
Christopher P. Warren, Mercedes Pascual, Kevin D. Lafferty, Armand M. Kuris
2010, Theoretical Ecology (3) 285-294
Although parasites represent an important component of ecosystems, few field and theoretical studies have addressed the structure of parasites in food webs. We evaluate the structure of parasitic links in an extensive salt marsh food web, with a new model distinguishing parasitic links from non-parasitic links among free-living species. The...
Parametric study of the physical properties of hydrate-bearing sand, silt, and clay sediments: 1. Electromagnetic properties
J.Y. Lee, J.C. Santamarina, C. Ruppel
2010, Journal of Geophysical Research (115)
The marked decrease in bulk electrical conductivity of sediments in the presence of gas hydrates has been used to interpret borehole electrical resistivity logs and, to a lesser extent, the results of controlled source electromagnetic surveys to constrain the spatial distribution and predicted concentration of gas hydrate in natural settings....
Pancam and Microscopic Imager observations of dust on the Spirit Rover: Cleaning events, spectral properties, and aggregates
Alicia F. Vaughan, Jeffrey R. Johnson, Kenneth E. Herkenhoff, Robert Sullivan, Geoffrey A. Landis, Walter Goetz, Morten B. Madsen
2010, Mars, The International Journal of Mars Science and Exploration (5) 129-145
This work describes dust deposits on the Spirit Rover over 2000 sols through examination of Pancam and Microscopic Imager observations of specific locations on the rover body, including portions of the solar array, Pancam and Mini-TES calibration targets, and the magnets. This data set reveals the three "cleaning events" experienced...
Patterns of organic contaminants in eggs of an insectivorous, an omnivorous, and a piscivorous bird nesting on the Hudson River, New York, USA
Christine M. Custer, Thomas W. Custer, Paul M. Dummer
2010, Environmental Toxicology and Chemistry (29) 2286-2296
Belted kingfisher (Ceryle alcyon), spotted sandpiper (Actitus macularia), and tree swallow (Tachycineta bicolor) eggs were collected in 2004 from the upper Hudson River, New York, USA. This area is one of the most polychlorinated biphenyl (PCB)‐contaminated locations in North America. Multivariate analyses indicated among species differences in the concentration and...
Changes of freshwater-lens thickness in basaltic island aquifers overlain by thick coastal sediments
Kolja Rotzoll, Delwyn S. Oki, Aly I. El-Kadi
2010, Hydrogeology Journal (18) 1425-1436
Freshwater-lens thickness and long-term changes in freshwater volume in coastal aquifers are commonly assessed through repeated measurement of salinity profiles from monitor wells that penetrate into underlying salt water. In Hawaii, the thickest measured freshwater lens is currently 262 m in dike-free, volcanic-rock aquifers that are overlain by thick coastal...
Optimal control of native predators
Julien Martin, Allan F. O’Connell, William L. Kendall, Michael C. Runge, Theodore R. Simons, Arielle H. Waldstein, Shiloh A. Schulte, Sarah J. Converse, Graham W. Smith, Timothy Pinion, Michael Rikard, Elise F. Zipkin
2010, Biological Conservation (143) 1751-1758
We apply decision theory in a structured decision-making framework to evaluate how control of raccoons (Procyon lotor), a native predator, can promote the conservation of a declining population of American Oystercatchers (Haematopus palliatus) on the Outer Banks of North Carolina. Our management objective was to maintain Oystercatcher productivity above a...
Occupancy dynamics in a tropical bird community: Unexpectedly high forest use by birds classified as non‐forest species
Viviana Ruiz-Gutierrez, Elise F. Zipkin, Andre A. Dhondt
2010, Journal of Applied Ecology (47) 621-630
1. Worldwide loss of biodiversity necessitates a clear understanding of the factors driving population declines as well as informed predictions about which species and populations are at greatest risk. The biggest threat to the long-term persistence of populations is the reduction and changes in configuration of their natural habitat. 2....
Observed and predicted reproduction of Ceriodaphnia dubia exposed to chloride, sulfate, and bicarbonate
Peter J. Lasier, Ian R. Hardin
2010, Environmental Toxicology and Chemistry (29) 347-358
Chronic toxicities of Cl-, SO42-, and HCO3- to Ceriodaphnia dubia were evaluated in low- and moderate-hardness waters using a three-brood reproduction test method. Toxicity tests of anion mixtures were used to determine interaction effects and to produce models predicting C. dubia reproduction. Effluents diluted with low- and moderate-hardness waters were...
North American osprey populations and contaminants: Historic and contemporary perspectives
Charles J. Henny, Robert A. Grove, James L. Kaiser, Branden L. Johnson
2010, Journal of Toxicology and Environmental Health, Part B: Critical Reviews (13) 579-603
Osprey (Pandion haliaetus) populations were adversely affected by DDT and perhaps other contaminants in the United States and elsewhere. Reduced productivity, eggshell thinning, and high DDE concentrations in eggs were the signs associated with declining osprey populations in the 1950s, 1960s, and 1970s. The species was one of the first...
Nutrient fluxes at the landscape level and the R* rule
Shu Ju, Donald L. DeAngelis
2010, Ecological Modelling (221) 141-146
Nutrient cycling in terrestrial ecosystems involves not only the vertical recycling of nutrients at specific locations in space, but also biologically driven horizontal fluxes between different areas of the landscape. This latter process can result in net accumulation of nutrients in some places and net losses in others. We examined...
Nocturnal and diurnal activity of armored suckermouth catfish (Loricariidae: Pterygoplichthys) associated with wintering Florida manatees (Trichechus manatus latirostris)
Leo G. Nico
2010, Neotropical Ichthyology (8) 893-898
Several Pterygoplichthys species, members of the Neotropical catfish family Loricariidae, have been widely introduced outside their native ranges. In this paper, I present observations on the diel activity pattern of non-native Pterygoplichthys, tentatively identified as P. disjunctivus, with respect to their attachment and grazing on endangered Florida manatees, Trichechus manatus latirostris. The study was conducted...
Non-native salmonids affect amphibian occupancy at multiple spatial scales
David S. Pilliod, Blake R. Hossack, Peter F. Bahls, Evelyn L. Bull, Paul Stephen Corn, Grant Hokit, Bryce A. Maxell, James C. Munger, Aimee Wyrick
2010, Diversity and Distributions (16) 959-974
Aim The introduction of non-native species into aquatic environments has been linked with local extinctions and altered distributions of native species. We investigated the effect of non-native salmonids on the occupancy of two native amphibians, the long-toed salamander (Ambystoma macrodactylum) and Columbia spotted frog (Rana luteiventris), across three spatial...
Active Metal and Industrial Mineral Underground Mines in the United States in 2008
2010, Report
New trends in species distribution modelling
Niklaus E. Zimmermann, Thomas C. Edwards Jr., Catherine H. Graham, Peter B. Pearman, Jens-Christian Svenning
2010, Ecography (33) 985-989
Species distribution modelling has its origin in the late 1970s when computing capacity was limited. Early work in the field concentrated mostly on the development of methods to model effectively the shape of a species' response to environmental gradients (Austin 1987, Austin et al. 1990). The methodology and its framework...
Approaches to highly parameterized inversion: A guide to using PEST for model-parameter and predictive-uncertainty analysis
John E. Doherty, Randall J. Hunt, Matthew J. Tonkin
2010, Scientific Investigations Report 2010-5211
Analysis of the uncertainty associated with parameters used by a numerical model, and with predictions that depend on those parameters, is fundamental to the use of modeling in support of decisionmaking. Unfortunately, predictive uncertainty analysis with regard to models can be very computationally demanding, due in part to complex constraints...
Bayesian Inference: with ecological applications
William A. Link, Richard J. Barker
2010, Book
This text provides a mathematically rigorous yet accessible and engaging introduction to Bayesian inference with relevant examples that will be of interest to biologists working in the fields of ecology, wildlife management and environmental studies as well as students in advanced undergraduate statistics.. This text opens the door to Bayesian...
Climate Change and Sea-Level Rise in Florida - An Update of the Effects of Climate Change on Florida's Ocean and Coastal Resources
2010, Report
Deterring off-trail hiking in protected natural areas: Evaluating options with surveys and unobtrusive observation: Final report
K.A. Hockett, Y.F. Clark, J.L. Leung, Marion, L. Park
2010, Report
This report presents the results of research conducted on the 96-acre Bear Island along the Billy Goat Trail, Section A (BGT) that evaluated visitor motivations for off-trail hiking and the efficacy of four treatments designed to reduce this activity. This research was prompted by concerns about the impact of an...
Long-term persistence of spent lead shot in tundra wetlands
Paul L. Flint, Jason L. Schamber
2010, Journal of Wildlife Management (74) 148-151
We seeded experimental plots with number 4 lead pellets and sampled these plots for 10 years to assess the settlement rate of pellets in tundra wetland types commonly used by foraging waterfowl. After 10 years, about 10% of pellets remained within 6 cm of the surface, but >50% remained within...
Microbial degradation of plant leachate alters lignin phenols and trihalomethane precursors
Brian A. Pellerin, Peter J. Hernes, John Franco Saraceno, Robert G.M. Spencer, Brian A. Bergamaschi
2010, Journal of Environmental Quality (39) 946-954
Although the importance of vascular plant-derived dissolved organic carbon (DOC) in freshwater systems has been studied, the role of leached DOC as precursors of disinfection byproducts (DBPs) during drinking water treatment is not well known. Here we measured the propensity of leachates from four crops and four aquatic macrophytes to...
Metal exposure and effects in voles and small birds near a mining haul road in Cape Krusenstern National Monument, Alaska
William G. Brumbaugh, Miguel A. Mora, Thomas W. May, David N. Phalen
2010, Environmental Monitoring and Assessment (170) 73-86
Voles and small passerine birds were live-captured near the Delong Mountain Regional Transportation System (DMTS) haul road in Cape Krusenstern National Monument in northwest Alaska to assess metals exposure and sub-lethal biological effects. Similar numbers of animals were captured from a reference site in southern Cape Krusenstern National Monument for...
Low genetic variation and evidence of limited dispersal in the regionally important Belize manatee
M.E. Hunter, N. E. Auil-Gomez, K.P. Tucker, R. K. Bonde, J. Powell, P.M. McGuire
2010, Animal Conservation (13) 592-602
The Antillean subspecies of the West Indian manatee Trichechus manatus is found throughout Central and South America and the Caribbean. Because of severe hunting pressure during the 17th through 19th centuries, only small populations of the once widespread aquatic mammal remain. Fortunately, protections in Belize reduced hunting in the 1930s...