Landscape changes elevate the risk of avian influenza virus diversification and emergence in the East Asian–Australasian Flyway
Shenglai Yin, Chenchen Zhang, Claire Stewart Teitelbaum, Yali Si, Geli Zhang, Xinxin Wang, Dehua Mao, Zheng Y.X. Huangh, Willem Frederik de Boer, John Takekawa, Diann J. Prosser, Xiangming Xiao
2025, Proceedings of the National Academy of Sciences (122)
Highly pathogenic avian influenza viruses (HPAIV) persistently threaten wild waterfowl, domestic poultry, and public health. The East Asian–Australasian Flyway plays a crucial role in HPAIV dynamics due to its large populations of migratory waterfowl and poultry. Over recent decades, this flyway has undergone substantial landscape changes, including both losses and...
Integrating hunter dynamics and waterfowl dynamics to inform harvest management
Richard Eugene Waggaman Berl, Patrick K. Devers, G. Scott Boomer, Michael C. Runge
2025, Journal of Wildlife Management
The successful conservation and management of North American waterfowl relies upon an adaptive harvest management framework that accounts for changes in the system state and critical uncertainties related to the dynamics of waterfowl populations and habitats. Increasing recognition of the importance of the human dimensions of the harvest process, particularly...
Evaluating the performance of multiple precipitation datasets over the transboundary Ili River Basin between China and Kazakhstan
Baktybek Duisebek, Gabriel Senay, Dennis S. Ojima, Tibin Zhang, Janay Sagin, Xuejiao Wang
2025, Sustainability (17)
The Ili River Basin is characterized by complex topography and diverse climatic zones with limited in situ observations. This study evaluates the performance of six widely used precipitation datasets, CHIRPS (Climate Hazards Group InfraRed Precipitation with Station data), ERA5_Land (European Centre for Medium-Range Weather Forecasts—ECMWF Reanalysis 5_Land), GPCC (Global Precipitation...
Relationships between water quality, stream metabolism, and water stargrass growth in the lower Yakima River, 2018 to 2020
Rich W. Sheibley, Marcella Appel, James R. Foreman
2025, Preprint
Since the early 2000s, water clarity on the lower Yakima River has improved. Changes in best management practices combined with a total maximum daily load for suspended sediment led to these improved conditions. As water clarity improved, so did conditions for aquatic plants; the clearer the water, the better the...
Decision analysis in support of the National Elk Refuge bison and elk management plan
Jonathan D. Cook, Paul C. Cross, editor(s)
2025, Scientific Investigations Report 2025-5076
Preface This report was developed to evaluate the performance of a set of proposed alternatives for Cervus elaphus canadensis (elk) and Bison bison (bison) management at the National Elk Refuge (NER) in Wyoming, U.S.A., and to inform a National Environmental Policy Act Environmental Impact Statement focused on developing the next “Bison...
Assessing American eel (Anguilla rostrata) distribution in a heavily dammed watershed using eDNA : The Penobscot River watershed, Maine, USA
Shawn Snyder, Cody Dillingham, Lara S. Katz, Michael T. Kinnison, Joseph D. Zydlewski
2025, River Research and Applications (41) 1970-1981
Catadromous American eel ( Anguilla rostrata ) are native to Maine's Penobscot River watershed and historically have migrated through many of its tributaries prior to extensive damming. Recent restoration efforts, including dam removals, have improved connectivity in the lower reaches of the Penobscot River. Characterizing the extent of the American eel's distribution...
Magnitude, depth and methodological variations of spectral stress drop within the SCEC/USGS Community Stress Drop Validation Study using the 2019 Ridgecrest Earthquake Sequence
Rachel E. Abercrombie, Annemarie S. Baltay Sundstrom
2025, Bulletin of the Seismological Society of America (115) 2741-2768
We present the first ensemble analysis of the 56 different sets of results submitted to the ongoing Community Stress Drop Validation Study using the 2019 Ridgecrest, California, earthquake sequence. Different assumptions and methods result in different estimation of the source contribution to recorded seismograms, and hence to the source parameters...
Turning trash into treasure: Leveraging discarded filters for national-scale aquatic eDNA biomonitoring
Devin Nicole Jones-Slobodian, Daniel J. Wieferich, Noah Fierer, Joseph Crane, Adam Sepulveda
2025, Aquaculture, Fish and Fisheries (5)
Monitoring biodiversity changes over large spatiotemporal scales is critical for effective ecosystem conservation and management. This study investigates the potential of environmental DNA (eDNA) metabarcoding to enhance national-scale biomonitoring of freshwater diversity by leveraging discarded filters associated with routine water quality sampling from the U.S. Geological Survey's (USGS) National Water...
Multi-scale habitat characteristics influence Paleback Darter occupancy and detection probability
Maxwell L. Hartman, Katie M. Morris, Jonathan J. Spurgeon, Steve E. Lochmann
2025, Transactions of the American Fisheries Society (154) 585-594
ObjectiveThe limited distribution of the Paleback Darter Etheostoma pallididorsum, which is often associated with dynamic headwater streams, makes the species vulnerable to changes in its environment in west-central Arkansas. A detailed understanding of habitat characteristics that support the species at multiple spatial scales is limited. This project assessed the relative influences...
Sparse genetic data limit biodiversity assessments in protected areas globally
Ivan Paz-Vinas, Amy G. Vandergast, Chloé Schmidt, Deborah M. Leigh, Simon Blanchet, René D. Clark, Eric D. Crandall, Hanne De Kort, Jeff T. Falgout, Colin J. Garroway, Eleana Karachaliou, Francine Kershaw, David O’Brien, Malin L. Pinsky, Gernot Segelbacher, Rachel H. Toczydlowski, Margaret Hunter
2025, Frontiers in Ecology and the Environment (23)
Global conservation targets include protecting genetic diversity within species. Yet few studies have assessed whether protected areas (PAs) include genetically diverse populations across species globally. A first step is understanding the availability of population genetic data that could be used in these assessments. We surveyed georeferenced population-level nuclear (as opposed...
Insights and strategic opportunities from the USGS 2024 Per- and Polyfluoroalkyl Substances (PFAS) Interagency Workshop
Deborah D. Iwanowicz, Kimberly R. Beisner, Paul M. Bradley, Patricia R. Bright, Juliane B. Brown, Christopher J. Churchill, Stephanie E. Gordon, Natalie Karouna-Renier, Dana W. Kolpin, Rebecca B. Lambert, Erin L. Pulster, Rip S. Shively, Kelly Smalling, Jeffery A. Steevens, Andrea K. Tokranov
2025, Open-File Report 2025-1044
Introduction In 2021, the U.S. Geological Survey (USGS) published Circular 1490 titled, “Integrated Science for the Study of Perfluoroalkyl and Polyfluoroalkyl Substances (PFAS) in the Environment: A Strategic Science Vision for the U.S. Geological Survey” (Tokranov and others, 2021). Circular 1490 was created to be a resource for USGS scientists prioritizing...
The U.S. Geological Survey National Water Quality Network—Surface Water, 2024
Melissa L. Riskin
2025, General Information Product 259
The U.S. Geological Survey (USGS) National Water Quality Network for surface water (NWQN-SW) was established in 2013 to develop long-term, comparable assessments of surface-water quality in support of national, regional, State, and local needs related to water-quality management and policy. Water-quality samples are collected at each site and measured for...
Population genomics of Aedes albopictus across remote Pacific islands for genetic biocontrol considerations
Sangwoo Seok, Adam E. Vorsino, Travis C. Collier, Limb Hapairai, Christopher M. Jacobsen, Jeomhee M. Hasty, Ana L. Romero-Weaver, Eva A. Buckner, Dennis A. LaPointe, Mark Leong, Leo Braack, Christine A. Tabuloc, Joanna C. Chiu, Robyn Raban, Omar S. Akbari, Yoosook Lee
2025, PLoS Neglected Tropical Diseases (19)
Remote Pacific islands (RPI) are characterized by ecological isolation, diverse endemic species, and vulnerability to invasive organisms due to globalization-driven connectivity. Among these species, Aedes albopictus, a highly invasive vector of flaviviruses, has spread extensively across the RPI via human-mediated dispersal, posing significant health and economic burdens. While the population structure...
Dynamic feedbacks between river meandering and landsliding in northwestern Washington glacial terraces
Shelby Marie Ahrendt, Benjamin Mirus, Sean Richard LaHusen, Jonathan Patrick Perkins
2025, JGR Earth Surface (130)
Landsliding in river valleys poses unique risks for cascading hazards and can damage infrastructure and cause fatalities. In postglacial valleys, many landslides are posited to occur in relation to lateral river erosion, but the dynamics of fluvial-hillslope interactions are not well understood. Here, we investigate a section of the Nooksack...
Performance mapping and weighting for the evapotranspiration models of the OpenET ensemble
Meredith Reitz, J. M. Volk, T. Ott, M. Anderson, Gabriel Senay, F. Melton, A. Kilic, R. Allen, J. B. Fisher, Anderson Ruhoff, A.J. Purdy, J. Huntington
Thomas Ott, Martha Anderson, Forrest Melton, Ayse Kilic, Richard Allen, Joshua Fisher, Anderson Ruhoff, Adam Purdy, Justin Huntington, editor(s)
2025, Water Resources Research (61)
Evapotranspiration (ET) accounts for the majority of water available from precipitation in the terrestrial water cycle, and improvements to the accuracy, resolution, and coverage of ET data can enhance hydrologic models and assessments. The OpenET collaboration of six remotely sensed ET modeling teams has demonstrated that an ensemble approach to...
Quantitative subsurface characterization illuminates the origin of the Quaternary Mississippi River Valley alluvial aquifer
Yuqi Song, Frank T.-C. Tsai, Burke J. Minsley, Chenliang Wu, Essem Heggy
2025, Communications Earth and Environment (6)
The Mississippi River Valley alluvial aquifer (MRVA) is vital to U.S. food security and global agricultural supply. However, quantitative understanding of its Quaternary origin, architecture, and hydrologic function remains incomplete. Here we develop a three-dimensional hydrostratigraphic model to characterize the deposition of clay and silt, fine-medium sands, and graveliferous sands...
Deformity, erosion, lesion, tumor, and parasite (DELT) anomalies in fish communities of the Chesapeake Bay watershed, USA: A regional assessment and potential landscape drivers
Sara E. Breitmeyer, Paul McLaughlin, Vicki S. Blazer, Gregory E. Noe, Kelly Smalling, Timothy A. Wertz, Tyler Wagner
2025, Environmental Monitoring and Assessment (197)
Fish diseases in freshwater ecosystems pose significant ecological and socioeconomic challenges, yet monitoring them in wild populations is complex due to interactions between pathogens, hosts, and environmental conditions. We examine the prevalence and watershed-scale landscape drivers of external deformity, erosion, lesion, tumor, and parasite (DELT) anomalies in 57 riverine fish...
Extracting data from maps: Lessons learned from the artificial intelligence for critical mineral assessment competition
Margaret A. Goldman, Graham W. Lederer, Joshua Mark Rosera, Garth E. Graham, Asitang Mishra, Alice Yepremyan
2025, Applied Computing and Geosciences (27)
The U.S. Geological Survey (USGS), Defense Advanced Projects Research Agency (DARPA), NASA Jet Propulsion Laboratory (JPL), and MITRE ran a 12-week machine learning competition aimed at accelerating development of AI tools for critical mineral assessments. The Artificial Intelligence for Critical Mineral Assessment Competition solicited innovative solutions for two challenges: 1)...
Estimating drivers and identifying uncertainties in smallmouth bass population dynamics in an invaded river network
Lindsey A. Bruckerhoff, Charles B. Yackulic, Drew Elliot Eppehimer, Kevin R. Bestgen, M. Tildon Jones, Chris Michaud
2025, Canadian Journal of Fisheries and Aquatic Sciences (82) 1-24
Smallmouth bass (Micropterus dolomieu) is an important recreational sportfish and destructive non-native species when introduced into freshwater habitats. There is therefore a need to understand the drivers of, and uncertainties in, smallmouth bass population dynamics for various management objectives. We combined long-term smallmouth bass catch-effort and early life history data...
Evaluation of the effects of sediments contaminated by industrial discharges to a unionid mussel (Fatmucket, Lampsilis siliquoidea) and a common test benthic organism (Amphipod, Hyalella azteca)
Chris D. Ivey, Jeffery A. Steevens, Ning Wang, Kathleen Patnode, James L. Kunz, John M. Besser
2025, Environmental Toxicology and Chemistry (44) 3202-3211
Freshwater mussels are among the most sensitive species to a variety of chemicals in water exposures. However, few studies have been conducted to evaluate the effect of toxicants in sediments on mussels. Industrial discharges containing polyaromatic hydrocarbons (PAHs), volatile organic compounds (VOCs), and metals entered the Kanawha River surrounding Blaine...
Mapping ecological states in the upper Colorado River basin: Implications for fire management
John P. Severson, Tara B. Bishop, Anna C. Knight, Travis W. Nauman, Brandon E. McNellis, Miguel L. Villarreal, Sasha C. Reed, Kristina E. Young, Mark Brunson, Michael C. Duniway
2025, Environmental Research: Ecology (4)
Spatially explicit information on ecosystem dynamics that offers a mechanistic understanding of ecological processes can benefit environmental management. Broad-scale maps based on state-and-transition models provide valuable insight into transitions among ecological states resulting from specific drivers within areas sharing similar climatic and edaphic characteristics ecological sites (ES). We aimed to...
Water-resources inventory and assessment at Katahdin Woods and Waters National Monument
Amanda L. Tudor
2025, Scientific Investigations Report 2025-5070
The U.S. Geological Survey, in cooperation with the National Park Service, prepared a water-resources inventory and assessment for Katahdin Woods and Waters National Monument (KAWW). This compilation includes published and publicly accessible hydrologic data and resource assessments of streams, rivers, ponds, lakes, wetlands, vernal pools, and groundwater in and near...
Density dependence and weather drive dabbling duck spatiotemporal distributions and intercontinental migration
Ben D. Golas, Diann J. Prosser, Andrew M. Ramey, Paul K. Link, Wayne E. Thogmartin
2025, Avian Research (16)
Understanding migratory waterfowl spatiotemporal distributions is important because, in addition to their economic and cultural value, wild waterfowl can be infectious reservoirs of highly pathogenic avian influenza virus (HPAIV). Waterfowl migration has been implicated in regional and intercontinental HPAIV dispersal,...
Hydrophone placement yields high variability in detection of Epinephelus striatus calls at a spawning site.
Cameron J. Van Horn, Alli C. Candelmo, Scott A. Heppell, Croy R.M. McCoy, Christine V. Pattengill-Semmens, Lynn Waterhouse, Laurent M. Cherubin, J. Christopher Taylor, William Michaels, James Locascio, Ali K. Ibrahim, Brice X. Semmens
2025, Ecological Applications (35)
Passive acoustic monitoring is a cost-effective, minimally invasive technology commonly used to study behavior and population dynamics of soniferous fish species. To understand the strengths and limitations of acoustic monitoring for this purpose at fish spawning aggregations (FSA) requires an assessment of the variability in aggregation-associated sounds (AAS) as a...
Using imaging spectroscopy and elevation in machine learning to estimate soil salinity in intermittently tidal wetlands
German Silva, Dar Roberts, Kristin B. Byrd, Dana Chadwick, Ian Walker, Jennifer King
2025, Ecosphere (16)
Coastal soil salinization patterns are changing due to drought, sea level rise (SLR), and changing freshwater inflow. These changes are expected to impact coastal wetland plant health and ecosystem function, such as changes to biomass and productivity. These impacts have led to greater interest in how we monitor soil salinization...