A graphical causal model for resolving species identity effects and biodiversity–ecosystem function correlations: Reply
Donald Schoolmaster, Chad R Zirbel, James P. Cronin
2022, Ecology (103)
No abstract available....
Correspondence analysis for mineral commodity research: An example workflow for mineralized calderas, southwest United States
Joshua Mark Rosera, Drew S Coleman
2022, Natural Resources Research (31) 9-36
Historical mine and mineral deposit datasets are routinely used to inform quantitative mineral assessment models, but they also can contain a wealth of supplementary qualitative information that is generally underutilized. We present a workflow that uses correspondence analysis, an exploratory tool commonly applied to multivariate abundance...
Identifying factors that affect mountain lake sensitivity to atmospheric nitrogen deposition across multiple scales
Benjamin Burpee, Jasmine Saros, Leora Nanus, Jill S. Baron, Janice Brahney, Kyle Christianson, Taylor Gantz, Andi Heard, Beth Hundey, Karin Koinig, Jiri Kopacek, Katrina Moser, Koren Nydick, Isabella A. Oleksy, Steven Sadro, Ruben Sommaruga, Rolf Vinebrooke, Jason Williams
2022, Water Research (209)
Increased nitrogen (N) deposition rates over the past century have affected both North American and European mountain lake ecosystems. Ecological sensitivity of mountain lakes to N deposition varies, however, because chemical and biological responses are modulated by local watershed and lake properties. We evaluated predictors of...
Predicting coastal impacts by wave farms: A comparison of wave-averaged and wave-resolving models
Daniel R. David, Dirk P. Rijnsdorp, Jeff E. Hansen, Ryan J. Lowe, Mark L. Buckley
2022, Renewable Energy (183) 764-780
Wave energy converters (WECs) will have to be arranged into arrays of many devices to extract commercially viable amounts of energy. To understand the potential coastal impacts of WEC arrays, most research to date has relied on wave-averaged models given their...
Combining fixed-location count data and movement data to estimate abundance of a lake sturgeon spawning run
Lisa K. Izzo, Gayle Barbin Zydlewski, Donna L. Parrish
2022, Canadian Journal of Fisheries and Aquatic Sciences (79) 925-935
Estimating abundance of migrating fishes is challenging. While sonars can be deployed continuously, improper assumptions about unidirectional migration and complete spatial coverage can lead to inaccurate estimates. To address these challenges, we present a framework for combining fixed-location count data from a dual-frequency identification sonar (DIDSON) with movement data from...
Directional selection shifts trait distributions of planted species in dryland restoration
Kathleen R. Balazs, Seth M. Munson, Caroline Ann Havrilla, Bradley J. Butterfield
2022, Journal of Ecology (110) 540-552
The match between species trait values and local abiotic filters can restrict community membership. An often-implicit assumption of this relationship is that abiotic filters select for a single locally optimal strategy, though difficulty in isolating effects of the abiotic environment from those of dispersal limitation and biotic interactions has...
New insights on faulting and intrusion processes during the June 2007, East Rift Zone eruption of Kilauea volcano, Hawai'i
J. Leeburn, C. Wauthier, Emily K. Montgomery-Brown, J. Gonzalez-Santana
2022, Journal of Volcanology and Geothermal Research (421)
The East Rift Zone (ERZ) of Kīlauea Volcano, Hawai'i, represents one of the most volcanically active regions in the world. The 2007 Father's Day (FD) dike intrusion, eruption, and accompanying slow-slip event (SSE) has been previously modeled using geodetic data to constrain the geometry of the intrusion and the timing...
An evaluation of the timing accuracy of global and regional seismic stations and networks
Ying Yang, Xiaodong Song, Adam T. Ringler
2022, Seismological Research Letters (93) 161-172
Clock accuracy is a basic parameter of any seismic station and has become increasingly important for seismology as the community seeks to refine structures and dynamic processes of the Earth. In this study, we measure the arrival time differences of moderate repeating earthquakes with magnitude...
Riverscape approaches in practice: Perspectives and applications
Christian E. Torgersen, Celine Le Pichon, Aimee H. Fullerton, Stephen J. Dugdale, Jeffrey J. Duda, Floriane Giovannini, Evelyne Tales, Jerome Belliard, Paulo Branco, Normand E. Bergeron, Mathieu L. Roy, Diego Tonolla, Nicolas Lamouroux, Herve Capra, Colden V. Baxter
2022, Biological Reviews (97) 481-504
Landscape perspectives in riverine ecology have been undertaken increasingly in the last 30 years, leading aquatic ecologists to develop a diverse set of approaches for conceptualizing, mapping and understanding ‘riverscapes’. Spatiotemporally explicit perspectives of rivers and their biota nested within the socio-ecological landscape now provide guiding principles...
Proportions, timing, and re-equilibration progress during the 1959 Summit Eruption of Kīlauea: An example of magma mixing processes operating during OIB petrogenesis
Rosalind L. Helz
2022, Journal of Petrology (63)
Petrographic and chemical analysis of scoria samples collected during the 1959 Kīlauea summit eruption illustrates the progress of thermal and chemical homogenization of the melts, and the gradual growth and/or re-equilibration of olivine phenocrysts, over the course of the eruption. Glass compositions show that thermal equilibration was largely complete...
Estimating abundance, temporary emigration and the pattern of density dependence in a cyclic snowshoe hare population in Yukon, Canada
Madan K. Oli, Alice J Kenny, Rudy Boonstra, Stan Boutin, Vratika Chaudhary, James E. Hines, Charles J Krebs
2022, Canadian Journal of Zoology (100) 36-45
Estimates of demographic parameters based on capture-mark-recapture (CMR) methods may be biased when some individuals in the population are temporarily unavailable for capture (temporary emigration). We estimated snowshoe hare abundance, apparent survival, and probability of temporary emigration in a population of snowshoe hares (Lepus americanus Erxleben 1777) in...
Magmatism, migrating topography, and the transition from Sevier shortening to Basin and Range extension, western United States
Jens-Erik Lundstern, Elizabeth L. Miller
2022, GSA Special Papers (555)
The paleogeographic evolution of the western U.S. Great Basin from the Late Cretaceous to the Cenozoic is critical to understanding how the North American Cordillera at this latitude transitioned from Mesozoic shortening...
Natural inactivation of MS2, poliovirus type 1 and Cryptosporidium parvum in an anaerobic and reduced aquifer
John T. Lisle, Geroge Lukasic
2022, Journal of Applied Microbiology (132) 2464-2474
AimsThe study of microbial inactivation rates in aquifer systems has most often been determined in aerobic and oxidized systems. This study examined the inactivation (i.e. loss of infectivity) of MS2, poliovirus type 1 (PV1) and Cryptosporidium parvum in an anaerobic and reduced groundwater system that has been identified as...
Tree mortality response to drought-density interactions suggests opportunities to enhance drought resistance
John B. Bradford, Robert K Shriver, Marcos D. Robles, Lisa A McCauley, Caitlin M. Andrews, Michael A. Crimmins, David M. Bell
2022, Journal of Applied Ecology. (59) 549-559
The future of dry forests around the world is uncertain given predictions that rising temperatures and enhanced aridity will increase drought-induced tree mortality. Using forest management and ecological restoration to reduce density and competition for water offers one of the few pathways that forests managers can potentially minimize drought-induced tree...
Bankfull shear velocity predicts embeddedness and silt cover in gravel streambeds
Jonathan A. Czuba, Mallory Hirschler, Elizabeth A. Pratt, Amy Villamagna, Paul L. Angermeier
2022, River Research and Applications (38) 59-68
Excess fine sediment (<2 mm) deposition on gravel streambeds can degrade habitat quality for stream biota. Two measures of fine sediment deposition include embeddedness and silt cover (<62.5 μm). Embeddedness measures fine sediment in interstitial pore spaces, whereas silt cover, primarily deposited during low flows, measures fine sediment draped on the streambed's...
Techniques to improve ecological interpretability of black box machine learning models
Thomas Welchowski, Kelly O. Maloney, Richard M. Mitchell, Matthias Schmid
2022, Journal of Agricultural, Biological, and Environmental Statistics (27) 175-197
Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with...
Bayesian modeling can facilitate adaptive management in restoration
Cara Applestein, T. Trevor Caughlin, Matthew J. Germino
2022, Restoration Ecology (30)
There is an urgent need for near-term predictions of ecological restoration outcomes despite imperfect knowledge of ecosystems. Restoration outcomes are always uncertain but integrating Bayesian modeling into the process of adaptive management allows researchers and practitioners to explicitly incorporate prior knowledge of ecosystems into future predictions. Although barriers exist, employing...
Recursive Bayesian computation facilitates adaptive optimal design in ecological studies
Clinton B. Leach, William J. Perry, Joseph M. Eisaguirre, Jamie N. Womble, Michael R. Bower, Mevin Hooten
2022, Ecology (103)
Optimal design procedures provide a framework to leverage the learning generated by ecological models to flexibly and efficiently deploy future monitoring efforts. At the same time, Bayesian hierarchical models have become widespread in ecology and offer a rich set of tools for ecological learning and...
The role of preexisting upper plate strike-slip faults during long-lived (ca. 30 Myr) oblique flat slab subduction, southern Alaska
Trevor Waldien, Richard O. Lease, Sarah Roeske, Jeff Benowitz, Paul O'Sullivan
2022, Earth and Planetary Science Letters (557)
Upper plates of subduction zones commonly respond to flat slab subduction by structural reactivation, magmatic arc disruption, and foreland basin inversion. However, the role of active strike-slip faults in focusing convergent deformation and magmatism in response to oblique flat slab subduction remains...
Next-generation lampricides: A three-stage process to develop improved control tools for invasive sea lamprey
Steve Lantz, Bob Adair, Jon Amberg, Roger A. Bergstedt, Michael A. Boogaard, Ugo Bussy, Margaret F. Docker, Erin S. Dunlop, Alex Gonzalez, Terrance Hubert, Michael J. Siefkes, Paul Sullivan, Steve Whyard, Michael P. Wilkie, Bradley Young, Andrew M. Muir
2022, Canadian Journal of Fisheries and Aquatic Sciences (79) 692-702
Successful integrated management of the invasive predatory sea lamprey (Petromyzon marinus) in the Laurentian Great Lakes of North America is owed largely to the long history of beneficial use of two lampricides: 3-trifluoromethyl-4-nitrophenol (TFM) and 2′,5-dichloro-4′-nitrosalicylanilide (niclosamide). Ensuring continued successful sea lamprey control necessitates consideration of possible next-generation lampricides to...
Temperature-based modeling of incubation period to protect loggerhead hatchlings on an urban beach in Northwest Florida
Kennard P. Watson, Margaret Lamont
2022, Journal of Experimental Marine Biology and Ecology (546)
Sea turtle hatchlings face many natural and anthropogenic threats during their short journey to the water after emerging from nests. Reducing hatchling mortality is critical to population recovery of imperiled sea turtle species; however, protecting hatchlings is particularly challenging on beaches degraded by human development and disturbances, including artificial lighting. Managers...
Fatty acid profiles of feeding and fasting bears: Estimating calibration coefficients, the timeframe of diet estimates, and selective mobilization during hibernation
Gregory W. Thiemann, Karyn D. Rode, Joy A Erlenbach, Suzanne Budge, Charles T. Robbins
2022, Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology (192) 379-395
Accurate information on diet composition is central to understanding and conserving carnivore populations. Quantitative fatty acid signature analysis (QFASA) has emerged as a powerful tool for estimating the diets of predators, but ambiguities remain about the timeframe of QFASA estimates and the need to account for...
Biodiversity–productivity relationships in a natural grassland community vary under diversity loss scenarios
Qingmin Pan, Amy Symstad, Yongfei Bai, Jianhui Huang, Jianguo Wu, Shahid Naeem, Dima Chen, Dashuan Tian, Qibing Wang, Xingguo Han
2022, Journal of Ecology (110) 210-220
Understanding the biodiversity–productivity relationship and underlying mechanisms in natural ecosystems under realistic diversity loss scenarios remains a major challenge for ecologists despite its importance for predicting impacts of rapid loss of biodiversity worldwide. Here we report the results of a plant functional group (PFG) removal experiment conducted on the...
Density structure of the island of Hawai’i and the implications for gravity-driven motion of the south flank of Kilauea volcano
Roger P. Denlinger, Ashton F. Flinders
2022, Geophysical Journal International (228) 1793-1807
The discovery that large landslides dissected the Hawaiian islands, scattering debris over thousands of square kilometers of seafloor, changed our ideas of island growth and evolution. The evidence is consistent with catastrophic flank collapse during volcano growth, and draws our focus to the currently active island of Hawai’i, the volcanoes...
Modeling seismic network detection thresholds using production picking algorithms
David C. Wilson, Emily Wolin, William L. Yeck, Robert Anthony, Adam T. Ringler
2022, Seismological Research Letters (93) 149-160
Estimating the detection threshold of a seismic network (the minimum magnitude earthquake that can be reliably located) is a critical part of network design and can drive network maintenance efforts. The ability of a station to detect an earthquake is often estimated by assuming the...