Artificial intelligence and avian influenza: Using machine learning to enhance active surveillance for avian influenza viruses
Daniel P. Walsh, Ting Fung Ma, S. Ip, Jun Zhu
2019, Transboundary and Emerging Diseases (66) 2537-2545
Influenza A viruses are one of the most significant viral groups globally with substantial impacts on human, domestic animal and wildlife health. Wild birds are the natural reservoirs for these viruses, and active surveillance within wild bird populations provides critical information about viral evolution forming the basis of risk assessments...
Overview of emerging amphibian pathogens and modeling advances for conservation-related decisions
Evan H. Campbell Grant, Direnzo G
2019, Biological Conservation (236) 474-484
One of the leading causes of global amphibian decline is emerging infectious disease. We summarize the disease ecology of four major emerging amphibian infectious agents: chytrids, ranaviruses, trematodes, and Perkinsea. We focus on recently developed quantitative advances that build on well-established ecological theories and aid in studying epizootic and enzootic...
Documentation of a Soil-Water-Balance Model to estimate recharge to Blue Ridge, Piedmont, and Mesozoic Basin fractured-rock aquifers, Fauquier County, Virginia, 1996 through 2015
Kurt J. McCoy, David E. Ladd
2019, Scientific Investigations Report 2019-5056
This report documents a Soil-Water-Balance (SWB) model that was developed for an area covering the Blue Ridge, Piedmont, and Mesozoic basin fractured-rock aquifers in Fauquier County, Virginia, for the calendar years 1996–2015. The SWB model includes an area of 1,498 square miles, divided into 1,076-square-foot (100-square-meter) grid cells on which...
Barred Owls reduce occupancy and breeding propensity of Northern Spotted Owl in a Washington old-growth forest
Anna O. Mangan, Tara Chestnut, Jody C. Vogeler, Ian K. Breckheimer, Wendy M. King, Keith E. Bagnall, Katie M. Dugger
2019, Ornithological Applications (121)
Protected lands like national parks are important refuges for threatened and endangered species as environmental pressures on wildlife and their habitats increase. The Northern Spotted Owl (Strix occidentalis caurina), a species designated as threatened under the Endangered Species Act, occurs on public lands throughout the western United States including Mount...
Magmatic-hydrothermal gold mineralization at the Lone Tree Mine, Battle Mountain district, Nevada
Elizabeth A. Holley, Justin Lowe, Craig A. Johnson, Michael J. Pribil
2019, Economic Geology (114) 811-856
The Lone Tree deposit is located in the northern Battle Mountain mining district, Nevada. Prior to mine closure in 2006, Santa Fe Pacific Gold and Newmont produced 4.2 Moz of gold at an average grade of 2.06 g/t at Lone Tree, primarily from the N-S– to NNW-SSE–striking Wayne zone. The...
Hydroclimatology of the Mississippi River Basin
Gregory J. McCabe, David M. Wolock
2019, Journal of the American Water Resources Association (55) 1053-1064
Model estimated monthly water balance (WB) components (i.e., potential evapotranspiration, actual evapotranspiration, and runoff [R]) for 848 United States (U.S.) Geological Survey 8-digit hydrologic units located in the Mississippi River Basin (MRB) are used to examine the temporal and spatial variability of the MRB WB for water years 1901 through...
Simulations of hydrology and water quality for irrigated fields near Yakima, Washington
Richard M. Webb
2019, Conference Paper, Working watersheds and coastal systems: Research and management for a changing future — Proceedings of the Sixth Interagency Conference on Research in the Watersheds
Reliable tools are needed by farmers and managers to estimate and mitigate impacts of altered hydrology and degraded water quality downstream of agricultural areas. The Water, Energy, and Biogeochemical Model (WEBMOD) (Webb and Parkhurst 2017) was used to simulate daily variations of hydrology and water quality for 5 square kilometers...
Phylogeny and foraging mode correspond with thiaminase activity in freshwater fishes: Potential links to environmental factors
Daniel E Spooner, Kristin Boggs, Dustin R. Shull, Dale C. Honeyfield, Timothy Wertz, Stephanie Sweet
2019, Freshwater Science (3) 605-615
Knowledge of the dietary components of fish species is important for understanding their growth, survival, and recruitment. Deficiency in thiamine (vitamin B1) leading to reproductive failure and physiological illness among freshwater fishes has been attributed to thiaminase activity in fish in the Great Lakes and the New York Finger Lakes,...
Cross-scale interactions dictate regional lake carbon flux and productivity response to future climate
Jacob Aaron Zwart, Zachary J Hanson, Jordan Read, Michael N. Fienen, Alan F. Hamlet, Diogo Bolster, Stuart E. Jones
2019, Geophysical Research Letters (46) 8840-8851
Lakes support globally important food webs through algal productivity and contribute significantly to the global carbon cycle. However, predictions of how broad-scale lake carbon flux and productivity may respond to future climate are extremely limited. Here, we used an integrated modeling framework to project changes in lake-specific...
Timescales of water-quality change in a karst aquifer, south-central Texas
MaryLynn Musgrove, John E. Solder, Stephen P. Opsahl, Jennifer T. Wilson
2019, Journal of Hydrology X (4)
Understanding the drivers and timescales over which groundwater quality changes informs groundwater management, use, and protection. To better understand timescales of water-quality change over short (daily to monthly) and long (seasonal to decadal) timescales, the U.S. Geological Survey’s National Water-Quality Assessment (NAWQA) Enhanced Trends Network (ETN) program instrumented and sampled...
Semantically supported linked data mapping
Dalia E. Varanka
2019, Report, 2019 US national report (US National Committee for the International Cartographic Association)
Semantic technology based on the Resource Description Framework (RDF) modeling environment has introduced new data management capabilities that can lead to innovative cartographic techniques. This report describes research toward more semantically expressive linked geospatial data mapping, topics of research, and an avenue for further international collaboration....
Occurrence, Abundance, and Associations of Topeka Shiners (Notropis topeka) in Restored and Unrestored Oxbows in Iowa and Minnesota, USA
Nicholas T. Simpson, Alexander P. Bybel, Michael J. Weber, Clay Pierce, Kevin J. Roe
2019, Aquatic Conservation: Marine and Freshwater Ecosystems (29) 1735-1748
In the USA, the Topeka shiner (Notropis topeka) is a federally listed endangered species that has been in decline for decades. A key reason for the decline is the alteration of naturally flowing streams and associated oxbow habitats resulting from land-use changes. The focus of recent conservation efforts for...
Hydrogeologic framework and delineation of transient areas contributing recharge and zones of contribution to selected wells in the upper Santa Fe Group aquifer, southeastern Albuquerque, New Mexico, 1900–2050
Nathan C. Myers, Paul J. Friesz
2019, Scientific Investigations Report 2019-5052
The Santa Fe Group aquifer is an important source of water to communities within the Middle Rio Grande Basin, including the Albuquerque-Rio Rancho metropolitan area and Kirtland Air Force Base, New Mexico. In November 1999, Kirtland Air Force Base personnel observed fuel-stained soils at the Bulk Fuels Facility on the...
Preface—Evaluating the response of critical zone processes to human impacts with sediment source fingerprinting
J. Patrick Laceby, Allen C. Gellis, Alexander J. Koiter, Will H. Blake, Olivier Evrard
2019, Journal of Soils and Sediments (19) 3245-3254
1) Background: Critical Zone Processes in the Anthropocene The Earth’s Critical Zone encompasses a suite of interconnected processes in the near-surface lithosphere, pedosphere, biosphere, atmosphere, and hydrosphere (Brantley et al., 2007; Lin, 2010) (Fig. 1). Processes and interactions both within and between these various Critical Zone components supports life-sustaining ecosystem services...
Remote sensing as the foundation for high-resolution United States landscape projections – The Land Change Monitoring, assessment, and projection (LCMAP) initiative
Terry L. Sohl, Jordan Dornbierer, Steve Wika, Charles Robison
2019, Environmental Modelling and Software (120)
The Land Change Monitoring, Assessment, and Projection (LCMAP) initiative uses temporally dense Landsat data and time series analyses to characterize landscape change in the United States from 1985 to present. LCMAP will be used to explain how past, present, and future landscape change affects society and natural systems. Here, we...
Geochemical characterization of iron and steel slag and its potential to remove phosphate and neutralize acid
Nadine M. Piatak, Robert R. Seal, II, Darryl Andre Hoppe, Carlin J. Green, Paul M. Buszka
2019, Minerals (9)
Iron and steel slags from legacy and modern operations in the Chicago-Gary area of Illinois and Indiana, USA, are predominantly composed of Ca (10 - 44 wt. % CaO), Fe, (0.3 - 28 wt. % FeO), and Si (10 - 44 wt. % SiO2), with generally lesser amounts of Al...
Fire severity and changing composition of forest understory plant communities
Jens Stevens, Jesse Miller, Paula J. Fornwalt
2019, Journal of Vegetation Science (30) 1099-1109
QuestionsGradients of fire severity in dry conifer forests can be associated with variation in understory floristic composition. Recent work in dry conifer forests in California, USA, has suggested that more severely burned stands contain more thermophilic taxa (those associated with warmer and drier conditions), and that forest...
Reduced soil macropores and forest cover reduce warm-season baseflow below ecological thresholds in the upper Delaware River Basin
Theodore A. Endreny, Peter Yong Seuk Kwon, Tanja N. Williamson, Richard Evans
2019, Journal of the American Water Resources Association (55) 1268-1287
We examined the impacts of changes in land cover and soil conditions on the flow regime of the upper Delaware River Basin using the Water Availability Tool for Environmental Resources (WATER). We simulated flows for two periods, circa 1600 and 1940, at three sites using the same temperature and precipitation...
Characterizing crop water use dynamics in the Central Valley of California using landsat-derived evapotranspiration
Matthew Schauer, Gabriel Senay
2019, Remote Sensing (15)
Understanding how different crops use water over time is essential for planning and managing water allocation, water rights, and agricultural production. The main objective of this paper is to characterize the spatiotemporal dynamics of crop water use in the Central Valley of California using Landsat-based annual actual evapotranspiration (ETa) from...
Rupture branching structure of the 2014 Mw 6.0 South Napa, California earthquake inferred from explosion-generated fault-zone trapped waves
Yong-Gang Li, Rufus D. Catchings, Mark Goldman
2019, Bulletin of the Seismological Society of America (109) 1907-1921
We present evidence for multiple fault branches of the West Napa fault zone (WNFZ) based on fault‐zone trapped waves (FZTWs) generated by two explosions that were detonated within the main surface rupture zone produced by the 24 August 2014 Mw 6.0 South Napa earthquake. The FZTWs were recorded by a...
Introduction to special issue on gas hydrate in porous media: Linking laboratory and field‐scale phenomena
Carolyn D. Ruppel, Joo Yong Lee, Ingo Pecher
2019, Journal of Geophysical Research B: Solid Earth (124) 7525-7537
The proliferation of drilling expeditions focused on characterizing natural gas hydrate as a potential energy resource has spawned widespread interest in gas hydrate reservoir properties and associated porous media phenomena. Between 2017 and 2019, a Special Section of this journal compiled contributed papers elucidating interactions between gas hydrate and sediment...
Impacts of suspended sediment on nearshore benthic light availability following dam removal in a small mountainous river:In situ observations and statistical modeling
H E Glover, A S Ogston, I M Miller, E F Eidam, Steve Rubin, H D Berry
2019, Estuaries and Coasts (42) 1804-1820
The 2011–2014 removal of two dams from the Elwha River, WA, delivered ~ 19 Mt of sediment to the marine environment, creating an opportunity to study the sensitivity of a coastal ecosystem to large-scale sediment input. Macroalgae, the primary habitat-forming species in the nearshore, disappeared from the region. It was hypothesized...
Evaluation of stream and wetlands restoration using UAS-based thermal infrared mapping
Mark Harvey, Danielle K. Hare, Alex Hackman, Glorianna Davenport, Adam Haynes, Ashley Helton, John W. Lane, Martin Briggs
2019, Water (11)
Large-scale wetland restoration often focuses on repairing the hydrologic connections degraded by anthropogenic modifications. Of these hydrologic connections, groundwater discharge is an important target, as these surface water ecosystem control points are important to thermal stability, among other ecosystem services. However, evaluating the effectiveness of the restoration activities on establishing...
See how they ran: Morphological and functional aspects of skeletons from ancient Egyptian shrew mummies (Eulipotyphla: Soricidae: Crocidurinae)
Neal Woodman, Alec T. Wilken, Salima Ikram
2019, Journal of Mammalogy (100) 1199-1210
Animals served important roles in the religious cults that proliferated during the Late (ca. 747–332 BCE) and Greco-Roman periods (332 BCE–CE 337) of ancient Egypt. One result was the interment of animal mummies in specialized necropolises distributed throughout the country. Excavation of a rock-tomb that was re-used during the Ptolemaic...
Growth and mortality of invasive Flathead Catfish in the tidal James River, Virginia
Corbin D. Hilling, Aaron J. Bunch, Jason A. Emmel, Joseph Schmitt, Donald J. Orth
2019, Journal of Fish and Wildlife Management (10) 641-652
Invasive species are a major threat to biodiversity of native fishes in North America. In Atlantic coastal rivers of the United States, large catfishes introduced from the Gulf of Mexico drainages have become established and contributed to native species declines. Flathead Catfish Pylodictis olivaris were introduced to the Chesapeake Bay drainage in...