Establishing chronologies for alluvial-fan sequences with analysis of high-resolution topographic data: San Luis Valley, Colorado, USA
Samuel Johnstone, Adam M. Hudson, Sylvia Nicovich, Chester A. Ruleman, Robert M. Sare, Ren A. Thompson
2018, Geosphere (14) 1-18
On active alluvial fans, debris-flow deposits and frequent avulsions produce a rough topographic surface. As is the case in many initially rough landforms produced by catastrophic processes, the topography of alluvial fans is progressively smoothed, producing textural differences useful in establishing relative age criteria for fans. Here, we outline an...
Upstream migration and spawning success of Chinook salmon in a highly developed, seasonally warm river system
William P. Connor, Kenneth F. Tiffan, James A. Chandler, Dennis W. Rondorf, Billy D. Arnsberg, Kelvin C. Anderson
2018, Reviews in Fisheries Science & Aquaculture (27) 1-50
This review summarizes what is known about the influence of water temperature and velocity on the migration and spawning success of an inland population of Chinook salmon Oncorhynchus tshawytscha. Models are then developed and used to illustrate how migration and spawning success might change if temperatures and velocities increase under a...
Evaluating inter-rater reliability and statistical power of vegetation measures assessing deer impact
Danielle R. Begley-Miller, Duane R. Diefenbach, Marc E. McDill, Christopher S. Rosenberry, Emily H. Just
2018, Forests (9)
Long-term vegetation monitoring projects are often used to evaluate how plant communities change through time in response to some external influence. Here, we evaluate the efficacy of vegetation monitoring to consistently detect changes in white-tailed deer browsing effects. Specifically, we compared inter-rater reliability (Cohen’s κ and Lin’s concordance correlation coefficient)...
Estimating the probability of movement and partitioning seasonal survival in an amphibian metapopulation
Erin L. Muths, Larissa L. Bailey, Brad A. Lambert, Scott C. Schneider
2018, Ecosphere (9)
Movement of individuals has been described as one of the best studied, but least understood concepts in ecology. The magnitude of movements, routes, and probability of movement have significant application to conservation. Information about movement can inform efforts to model species persistence and is particularly applicable...
El Niño/Southern Oscillation-driven rainfall pulse amplifies predation by owls on seabirds via apparent competition with mice
Sarah K. Thomsen, David M. Mazurkiewicz, Thomas R. Stanley, David J. Green
2018, Proceedings of the Royal Society B: Biological Sciences (285)
Most approaches for assessing species vulnerability to climate change have focused on direct impacts via abiotic changes rather than indirect impacts mediated by changes in species interactions. Changes in rainfall regimes may influence species interactions from the bottom-up by increasing primary productivity in arid environments, but subsequently lead to less...
Mars global digital dune database (MGD3)—Composition, stability, and thermal inertia
Amber L. Gullikson, Rosalyn K. Hayward, Timothy N. Titus, Heather Charles, Lori K. Fenton, Rachael H. Hoover, Nathaniel E. Putzig
2018, Open-File Report 2018-1164
The Mars Global Digital Dune Database (MGD3) is an online repository that has catalogued dune fields larger than 1 km2 located between latitudes 90° N. and 90° S. The work presented here expands upon previous MGD3 open-file reports, with a new emphasis upon characterizing dune fields through composition, stability, and...
Preliminary investigation of groundwater quality near a Michigan cemetery, 2016–17
Angela K. Brennan, Carrie E. Givens, Julia G. Prokopec, Christopher J. Hoard
2018, Scientific Investigations Report 2018-5120
The potential effect of cemetery leachate on groundwater quality in the United States has rarely been studied. Nutrients and other constituents associated with decomposition and burial processes (such as embalming) have the potential to reach shallow groundwater and could affect nearby drinking-water sources. The objective of this preliminary investigation was...
Broad-spectrum antiviral JL122 blocks infection and inhibits transmission of aquatic rhabdoviruses
Bethany F. Balmer, Rodman G. Getchell, Rachel L. Powers, Jihye Lee, Tinghu Zhang, Michael E. Jung, Maureen K. Purcell, Kevin Snekvik, Hector C. Aguilar
2018, Virology (525) 143-149
The aquaculture industry is growing rapidly to meet the needs for global protein consumption. Viral diseases in aquaculture are quite challenging due to lack of treatment options as well as limited injection-delivery vaccines, which are costly. Thus, water-immersion antiviral treatments are highly desirable. This study focused on broad-spectrum, light-activated antivirals that target...
Rebuttal to “The case of the Biscayne Bay and aquifer near Miami, Florida: density-driven flow of seawater or gravitationally driven discharge of deep saline groundwater?” by Weyer (Environ Earth Sci 2018, 77:1–16)
Alden M. Provost, Adrian D. Werner, Vincent E. A. Post, Holly A. Michael, Christian D. Langevin
2018, Environmental Earth Sciences (77) 1-6
A recent paper by Weyer (Environ Earth Sci 2018, 77:1–16) challenges the widely accepted interpretation of groundwater heads and salinities in the coastal Biscayne aquifer near Miami, Florida, USA. Weyer (2018) suggests that the body of saltwater that underlies fresh groundwater just inland of the coast is not a recirculating...
Integrating encounter theory with decision analysis to evaluate collision risk and determine optimal protection zones for wildlife
B.J. Udell, Julien Martin, R.J. Fletcher, Mathieu Bonneau, Holly H. Edwards, T. Gowan, Stacie K. Hardy, E. Gurarie, C.S. Calleson, C.J. Deutsch
2018, Journal of Applied Ecology (56) 1050-1062
1.Better understanding human‐wildlife interactions and their links with management can help improve the design of wildlife protection zones. One example is the problem of wildlife collisions with vehicles or human‐built structures (e.g. power lines, wind farms). In fact, collisions between marine wildlife and watercraft are among the major threats faced...
Detecting snow depth change in avalanche path starting zones using uninhabited aerial systems and structure from motion photogrammetry
Erich H. Peitzsch, Daniel B. Fagre, Jordy Hendrikx, Karl W. Birkeland
2018, Conference Paper, Proceedings of the International Snow Science Workshop
Understanding snow depth distribution and change is useful for avalanche forecasting and mitigation, runoff forecasting, and infrastructure planning. Advances in remote sensing are improving the ability to collect snow depth measurements. The development of structure from motion (SfM), a photogrammetry technique, combined with the use of uninhabited aerial systems (UASs)...
Integrative taxonomy resolves taxonomic uncertainty for freshwater mussels being considered for protection under the U.S. Endangered Species Act
Nathan A. Johnson, Chase H. Smith, John M. Pfeiffer, Chalres R. Randklev, James D. Williams, James D. Austin
2018, Scientific Reports (8) 1-16
Objectively delimiting species boundaries remains an important challenge in systematics and becomes urgent when unresolved taxonomy complicates conservation and recovery efforts. We examined species boundaries in the imperiled freshwater mussel genus Cyclonaias(Bivalvia: Unionidae) using morphometrics, molecular phylogenetics, and multispecies coalescent models to help guide pending conservation assessments and legislative decisions. Congruence...
2018 update to the U.S. Geological Survey national volcanic threat assessment
John W. Ewert, Angela K. Diefenbach, David W. Ramsey
2018, Scientific Investigations Report 2018-5140
When erupting, all volcanoes pose a degree of risk to people and infrastructure, however, the risks are not equivalent from one volcano to another because of differences in eruptive style and geographic location. Assessing the relative threats posed by U.S. volcanoes identifies which volcanoes warrant the greatest risk-mitigation efforts by...
Geomorphic characteristics of Tenmile Creek, Montgomery County, Maryland, 2014–16
Edward J. Doheny, S. Matthew Baker
2018, Scientific Investigations Report 2018-5098
Data collected from April 2014 through September 2016 were used to assess geomorphic characteristics and geomorphic changes over time in a selected reach of Tenmile Creek, a small rural watershed near Clarksburg, Maryland. Longitudinal profiles of the channel bed, water surface, and bank features were developed from field surveys. Changes...
Development of a geodetic component for the U.S. West Coast Earthquake Early Warning System
Jessica R. Murray, Brendan W. Crowell, R. Grapenthin, Kathleen Hodgkinson, John O. Langbein, Timothy Melbourne, Diego Melgar, Sarah E. Minson, David A. Schmidt
2018, Seismological Research Letters (89) 2322-2336
An earthquake early warning (EEW) system, ShakeAlert, is under development for the West Coast of the United States. This system currently uses the first few seconds of waveforms recorded by seismic instrumentation to rapidly characterize earthquake magnitude, location, and origin time; ShakeAlert recently added a seismic line source algorithm. For...
Ice wedge degradation and stabilization impacts water budgets and nutrient cycling in Arctic trough ponds
Joshua C. Koch, M. Torre Jorgenson, Kimberly P. Wickland, Mikhail Z. Kanevskiy, Robert G. Striegl
2018, Journal of Geophysical Research: Biogeosciences (123) 2604-2616
Trough ponds are ubiquitous features of Arctic landscapes and an important component of freshwater aquatic ecosystems. Permafrost thaw causes ground subsidence, creating depressions that gather water, creating ponds. Permafrost thaw also releases solutes and nutrients, which may fertilize these newly formed ponds. We measured water budget...
Comparison of estimators for monitoring long-term population trends in deer mice, Peromyscus maniculatus, on the California Channel Islands
Catherin A. Schwemm, Charles A. Drost, John L. Orrock, Timothy J. Coonan, Thomas R. Stanley
2018, Western North American Naturalist (78) 496-509
Capture-recapture methods are commonly used to estimate abundance and density of wild animal populations. Although a variety of sophisticated analytical techniques are available to evaluate capture-recapture data, vertebrate monitoring programs often lack the resources (e.g., time, personnel, and/or analytical expertise) to apply these methods. As an alternative, simple population indices,...
Zooplankton dynamics in the Cache Slough complex of the upper San Francisco Estuary
Wim Kimmerer, Toni R. Ignoffo, Brooke Bemowski, Julien Moderan, Ann E. Holmes, Brian A. Bergamaschi
2018, San Francisco Estuary and Watershed Science (16)
We studied abundance and dynamics of zooplankton in the tidal freshwater Cache Slough Complex (CSC) in the northern Delta of the San Francisco Estuary during June, July, and October 2015. We asked whether the CSC was an area of high zooplankton production that could act as a source region for...
Drought and fire in the western USA: Is climate attribution enough?
Jeremy S. Littell
2018, Current Climate Change Reports (4) 396-406
Purpose of ReviewI sought to review the contributions of recent literature and prior foundational papers to our understanding of drought and fire. In this review, I summarize recent literature on drought and fire in the western USA and discuss research directions that may increase the...
Population differences in susceptibility to Plasmodium relictum in zebra finches Taeniopygia guttata
Erik K. Hofmeister, Christopher N. Balakrishnan, Carter T. Atkinson
2018, Avian Diseases (62) 351-355
Domesticated Australian and Timor zebra finches (Taeniopygia guttata castanotis, and T. guttata guttata, respectively) were inoculated with canary (Serinus canaria) blood containing a Hawaiian isolate of Plasmodium relictum (lineage GRW04), a hemoparasite that causes avian malaria. In two experimental trials, Timor, but not Australian zebra finches developed parasitemia that was...
Downscaling of climate model output for Alaskan stakeholders
John E. Walsh, Uma S. Bhatt, Jeremy S. Littell, Matthew Leonawicz, Michael Lindgren, Thomas A. Kurkowski, Peter A. Bieniek, Richard Thoman, Stephen T. Gray, T. Scott Rupp
2018, Environmental Modelling and Software (110) 38-51
The paper summarizes an end-to-end activity connecting the global climate modeling enterprise with users of climate information in Alaska. The effort included retrieval of the requisite observational datasets and model output, a model evaluation and selection procedure, the actual downscaling by the delta method with its inherent bias-adjustment, and the provision of products to...
Mapping crop residue and tillage intensity using WorldView-3 satellite shortwave infrared residue indices
W. Dean Hively, Brian T. Lamb, Craig S. T. Daughtry, Jacob Shermeyer, Gregory W. McCarty, Miguel Quemada
2018, Remote Sensing (10) 1-22
Crop residues serve many important functions in agricultural conservation including preserving soil moisture, building soil organic carbon, and preventing erosion. Percent crop residue cover on a field surface reflects the outcome of tillage intensity and crop management practices. Previous studies using proximal hyperspectral remote sensing have demonstrated accurate measurement of...
Growth and survival relationships of 71 tree species with nitrogen and sulfur deposition across the conterminous U.S.
Kevin J Horn, R. Quinn Thomas, Christopher M. Clark, Linda H Pardo, Mark E. Fenn, Gregory B. Lawrence, Steven S. Perakis, Erica A.H. Smithwick, Doug Baldwin, Sabine Braun, Annika Nordin, Charles H. Perry, Jennifer N Phelan, Paul G. Schaberg, Samuel B St Clair, Richard Warby, Shaun A. Watmough
2018, PLoS ONE (13)
Atmospheric deposition of nitrogen (N) influences forest demographics and carbon (C) uptake through multiple mechanisms that vary among tree species. Prior studies have estimated the effects of atmospheric N deposition on temperate forests by leveraging forest inventory measurements across regional gradients in deposition. However, in the United States...
Paleoseismic results from the Alpine site, Wasatch fault zone: Timing and displacement data for six holocene earthquakes at the Salt Lake City–Provo segment boundary
Scott E.K. Bennett, Christopher DuRoss, Ryan D. Gold, Richard W. Briggs, Stephen Personius, Nadine G. Reitman, Joshua Devore, Adam Hiscock, Shannon A. Mahan, Harrison J. Gray, Sydney Gunnarson, William J. Stephenson, Elizabeth Pettinger, Jackson K. Odum
2018, Bulletin of the Seismological Society of America (108) 3202-3224
To improve the characterization of Holocene earthquakes on the Wasatch fault zone (WFZ), we conducted light detection and ranging (lidar)‐based neotectonic mapping and excavated a paleoseismic trench across an 8‐m‐high fault scarp near Alpine, Utah, located <1  km"><span...
Submerged aquatic vegetation mapping in coastal Louisiana through development of a spatial likelihood occurrence (SLOO) model
Kristin DeMarco, Brady Couvillion, Stuart Brown, Megan La Peyre
2018, Aquatic Botany (151) 87-97
Determining the spatial distribution of coastal foundation species is essential to accurately determine restoration goals, predict the ecological effects of climate change, and develop habitat management strategies. Mapping the distribution of submerged aquatic vegetation (SAV) species assemblages, which provide important habitat resource and ecological services in Louisiana, has been difficult...