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Not all publications have extents, not all extents are completely accurate
A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing
Thierry A. Chambert, J. Hardin Waddle, David A.W. Miller, Susan C. Walls, James D. Nichols
2018, Methods in Ecology and Evolution (9) 560-570
The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing...
Novel application of explicit dynamics occupancy models to ongoing aquatic invasions
Adam Sepulveda
2018, Journal of Applied Ecology (55) 917-925
Identification of suitable habitats, where invasive species can establish, is an important step towards controlling their spread. Accurate identification is difficult for new or slow invaders because unoccupied habitats may be suitable, given enough time for dispersal, while occupied habitats may prove to be unsuitable for establishment.To identify the suitable...
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan K. McIlroy, DeWayne R. Derryberry
2018, Ecological Indicators (84) 793-802
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature...
Overview of a compre­hensive resource database for the assessment of recoverable hydrocarbons produced by carbon dioxide enhanced oil recovery
Marshall Carolus, Khosrow Biglarbigi, Peter D. Warwick, Emil D. Attanasi, Philip A. Freeman, Celeste D. Lohr
2018, Techniques and Methods 7-C16
A database called the “Comprehensive Resource Database” (CRD) was prepared to support U.S. Geological Survey (USGS) assessments of technically recoverable hydrocarbons that might result from the injection of miscible or immiscible carbon dioxide (CO2) for enhanced oil recovery (EOR). The CRD was designed by INTEK Inc., a consulting company under...
Research note: Mapping spatial patterns in sewer age, material, and proximity to surface waterways to infer sewer leakage hotspots
Kristina G. Hopkins, Daniel J. Bain
2018, Landscape and Urban Planning (170) 320-324
Identifying areas where deteriorating sewer infrastructure is in close proximity to surface waterways is needed to map likely connections between sewers and streams. We present a method to estimate sewer installation year and deterioration status using historical maps of the sewer network, parcel-scale property assessment data, and pipe material. Areas...
Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter
Jennifer W. Harden, Gustaf Hugelius, Anders Ahlstrom, Joseph C. Blankinship, Ben Bond-Lamberty, Corey Lawrence, Julie Loisel, Avni Malhotra, Robert B. Jackson, Stephen M. Ogle, Claire Phillips, Rebecca Ryals, Katherine Todd-Brown, Rodrigo Vargas, Sintana E. Vergara, M. Francesca Cotrufo, Marco Keiluweit, Katherine Heckman, Susan E. Crow, Whendee L. Silver, Marcia DeLonge, Lucas E. Nave
2018, Global Change Biology (24) e705-e718
Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have...
Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones
Alexander Y. Karatayev, Lyubov E. Burlakova, Knut Mehler, Serghei A. Bocaniov, Paris D. Collingsworth, Glenn Warren, Richard T. Kraus, Elizabeth K. Hinchey
2018, Journal of Great Lakes Research (44) 639-649
Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management...
Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America
Thomas Binder, Steve A. Farha, Henry T. Thompson, Christopher M. Holbrook, Roger A. Bergstedt, Stephen Riley, Charles R. Bronte, Ji He, Charles C. Krueger
2018, Ecology of Freshwater Fish (27) 594-605
Previous studies of lake trout, Salvelinus namaycush, spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry...
Groundwater development stress: Global-scale indices compared to regional modeling
William Alley, Brian R. Clark, Matt Ely, Claudia C. Faunt
2018, Groundwater (56) 266-275
The increased availability of global datasets and technologies such as global hydrologic models and the Gravity Recovery and Climate Experiment (GRACE) satellites have resulted in a growing number of global-scale assessments of water availability using simple indices of water stress. Developed initially for surface water, such indices are increasingly used...
Identifying species conservation strategies to reduce disease-associated declines
Brian D. Gerber, Sarah J. Converse, Erin L. Muths, Harry J. Crockett, Brittany A. Mosher, Larissa L. Bailey
2018, Conservation Letters (11) 1-10
Emerging infectious diseases (EIDs) are a salient threat to many animal taxa, causing local and global extinctions, altering communities and ecosystem function. The EID chytridiomycosis is a prominent driver of amphibian declines, which is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). To guide conservation policy, we developed a predictive decision-analytic model...
Tagging effects of passive integrated transponder and visual implant elastomer on the small-bodied white sands pupfish (Cyprinodon tularosa)
Damon Peterson, Randi B. Trantham, Tulley G. Trantham, Colleen A. Caldwell
2018, Fisheries Research (198) 203-208
One of the greatest limiting factors of studies designed to obtain growth, movement, and survival in small-bodied fishes is the selection of a viable tag. The tag must be relatively small with respect to body size as to impart minimal sub-lethal effects on growth and mobility, as well as be...
Meteorological and environmental variables affect flight behaviour and decision-making of an obligate soaring bird, the California Condor Gymnogyps californianus
Sharon A. Poessel, Joseph Brandt, Tricia A. Miller, Todd E. Katzner
2018, Ibis (160) 36-53
The movements of animals are limited by evolutionary constraints and ecological processes and are strongly influenced by the medium through which they travel. For flying animals, variation in atmospheric conditions is critically influential in movement. Obligate soaring birds depend on external sources of updraft more than do other flying species,...
The effects of snow and salt on ice table stability in University Valley, Antarctica
Kaj E. Williams, Jennifer L. Heldmann, Christopher P. McKay, Michael T. Mellon
2018, Antarctic Science (30) 67-78
The Antarctic Dry Valleys represent a unique environment where it is possible to study dry permafrost overlaying an ice-rich permafrost. In this paper, two opposing mechanisms for ice table stability in University Valley are addressed: i) diffusive recharge via thin seasonal snow deposits and ii) desiccation via salt deposits in...
Variation in fish mercury concentrations in streams of the Adirondack region, New York: A simplified screening approach using chemical metrics
Douglas A. Burns, Karen Riva-Murray
2018, Ecological Indicators (84) 648-661
Simple screening approaches for the neurotoxicant methylmercury (MeHg) in aquatic ecosystems may be helpful in risk assessments of natural resources. We explored the development of such an approach in the Adirondack Mountains of New York, USA, a region with high levels of MeHg bioaccumulation. Thirty-six perennial streams broadly representative of...
Estimating carbon and showing impacts of drought using satellite data in regression-tree models
Stephen P. Boyte, Bruce K. Wylie, Danny Howard, Devendra Dahal, Tagir G. Gilmanov
2018, International Journal of Remote Sensing (39) 374-398
Integrating spatially explicit biogeophysical and remotely sensed data into regression-tree models enables the spatial extrapolation of training data over large geographic spaces, allowing a better understanding of broad-scale ecosystem processes. The current study presents annual gross primary production (GPP) and annual ecosystem respiration (RE) for 2000–2013 in several short-statured vegetation...
2.3. Global-scale atmospheric dispersion of microorganisms
Dale W. Griffin, Cristina Gonzalez-Martin, C. Hoose, D.J. Smith
Anne-Marie Delort, Pierre Amato, editor(s)
2018, Book chapter, Microbiology of aerosols
This chapter addresses long-range dispersion and the survival of microorganisms across a wide range of altitudes in Earth's atmosphere. Topics include mechanisms of dispersion, survivability of microorganisms known to be associated with long-range transport, natural and artificial sources of bioaerosols, residence time estimation through the use of proxy aerosols, transport...
Semi-quantitative assessment of disease risks at the human, livestock, wildlife interface for the Republic of Korea using a nationwide survey of experts: A model for other countries
Jusun Hwang, Kyunglee Lee, Daniel P. Walsh, SangWha Kim, Jonathan M. Sleeman, Hang Lee
2018, Transboundary and Emerging Diseases (65) e155-e164
Wildlife-associated diseases and pathogens have increased in importance; however, management of a large number of diseases and diversity of hosts is prohibitively expensive. Thus, the determination of priority wildlife pathogens and risk factors for disease emergence is warranted. We used an online questionnaire survey to assess release and exposure risks,...
Evaluation of bias associated with capture maps derived from nonlinear groundwater flow models
Cara A. Nadler, Kip K. Allander, Greg Pohll, Eric D. Morway, Ramon C. Naranjo, Justin Huntington
2018, Groundwater (56) 458-469
The impact of groundwater withdrawal on surface water is a concern of water users and water managers, particularly in the arid western United States. Capture maps are useful tools to spatially assess the impact of groundwater pumping on water sources (e.g., streamflow depletion) and are being used more frequently for...
Comparison of four modeling tools for the prediction of potential distribution for non-indigenous weeds in the United States
Roger Magarey, Leslie Newton, Seung C. Hong, Yu Takeuchi, Dave Christie, Catherine S. Jarnevich, Lisa Kohl, Martin Damus, Steven I. Higgins, Leah Miller, Karen Castro, Amanda M. West, John Hastings, Gericke Cook, John Kartesz, Anthony Koop
2018, Biological Invasions (20) 679-694
This study compares four models for predicting the potential distribution of non-indigenous weed species in the conterminous U.S. The comparison focused on evaluating modeling tools and protocols as currently used for weed risk assessment or for predicting the potential distribution of invasive weeds. We used six weed species (three highly...
Improving predictions of tropical forest response to climate change through integration of field studies and ecosystem modeling
Xiaohui Feng, Maria Uriarte, Grizelle Gonzalez, Sasha C. Reed, Jill Thompson, Jess K. Zimmerman, Lora Murphy
2018, Global Change Biology (24) e213-e232
Tropical forests play a critical role in carbon and water cycles at a global scale. Rapid climate change is anticipated in tropical regions over the coming decades and, under a warmer and drier climate, tropical forests are likely to be net sources of carbon rather than sinks. However, our understanding...
Fine-scale habitat preference of green sturgeon (Acipenser medirostris) within three spawning locations in the Sacramento River, California
Megan T. Wyman, Michael J. Thomas, Richard R. McDonald, Alexander R. Hearn, Ryan D. Batt, Eric D. Chapman, Paul J. Kinzel, J. Tobey Minear, Ethan A. Mora, Jonathan M. Nelson, Matthew D. Pagel, A. Peter Klimley
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 779-791
Vast sections of the Sacramento River have been listed as critical habitat by the National Marine Fisheries Service for green sturgeon spawning (Acipenser medirostris), yet spawning is known to occur at only a few specific locations. This study reveals the range of physical habitat variables selected by adult green sturgeon...
Climate variability and vadose zone controls on damping of transient recharge
Claudia R. Corona, Jason J. Gurdak, Jesse E. Dickinson, T.P.A. Ferre, Edwin P. Maurer
2018, Journal of Hydrology (561) 1094-1104
Increasing demand on groundwater resources motivates understanding of the controls on recharge dynamics so model predictions under current and future climate may improve. Here we address questions about the nonlinear behavior of flux variability in the vadose zone that may explain previously reported teleconnections between global-scale climate variability and fluctuations...
A detailed risk assessment of shale gas development on headwater streams in the Pennsylvania portion of the Upper Susquehanna River Basin, U.S.A.
Kelly O. Maloney, John A. Young, Stephen Faulkner, Atesmachew Hailegiorgis, E. Terrence Slonecker, Lesley Milheim
2018, Science of the Total Environment (610-611) 154-166
The development of unconventional oil and gas (UOG) involves infrastructure development (well pads, roads and pipelines), well drilling and stimulation (hydraulic fracturing), and production; all of which have the potential to affect stream ecosystems. Here, we developed a fine-scaled (1:24,000) catchment-level disturbance intensity index (DII) that included 17 measures of...
Northern tamarisk beetle (Diorhabda carinulata) and tamarisk (Tamarix spp.) interactions in the Colorado River basin
Pamela L. Nagler, Uyen Nguyen, Heather L. Bateman, Christopher Jarchow, Edward P. Glenn, William J. Waugh, Charles van Riper III
2018, Restoration Ecology (26) 348-359
Northern tamarisk beetles (Diorhabda carinulata) were released in the Upper Colorado River Basin in the United States in 2004–2007 to defoliate introduced tamarisk shrubs (Tamarix spp.) in the region’s riparian zones. The primary purpose was to control the invasive shrub and reduce evapotranspiration (ET) by tamarisk in an attempt to increase stream...
Weather-centric rangeland revegetation planning
Stuart P. Hardegree, John T. Abatzoglou, Mark W. Brunson, Matthew J. Germino, Katherine C. Hegewisch, Corey A. Moffet, David S. Pilliod, Bruce A. Roundy, Alex R. Boehm, Gwendwr R. Meredith
2018, Rangeland Ecology and Management (71) 1-11
Invasive annual weeds negatively impact ecosystem services and pose a major conservation threat on semiarid rangelands throughout the western United States. Rehabilitation of these rangelands is challenging due to interannual climate and subseasonal weather variability that impacts seed germination, seedling survival and establishment, annual weed dynamics, wildfire frequency, and soil...