Ten quick tips to get you started with Bayesian statistics
Olivier Gimenez, J. Andrew Royle, Marc Kery, Chloe Nater
2024, Preprint
Bayesian statistics is a framework in which our knowledge about unknown quantities of interest (especially parameters) is updated with the information in observed data, though it can also be viewed as simply another method to fit a statistical model. It has become popular in many branches of biology. For context,...
Phenology forecasting models for detection and management of invasive annual grasses
Janet S. Prevéy, Ian S. Pearse, Dana M. Blumenthal, Armin J. Howell, Julie A. Kray, Sasha C. Reed, Mitchell B. Stephenson, Catherine S. Jarnevich
2024, Ecosphere (10)
Non-native annual grasses can dramatically alter fire frequency and reduce forage quality and biodiversity in the ecosystems they invade. Effective management techniques are needed to reduce these undesirable invasive species and maintain ecosystem services. Well-timed management strategies, such as grazing, that are applied when...
Continental-scale nutrient and contaminant delivery by Pacific salmon
Jessica E. Brandt, Jeff S. Wesner, Gregory T. Ruggerone, Timothy D. Jardine, Collin A. Eagles-Smith, Gabrielle E. Ruso, Craig A. Stricker, Cristofor A. Voss, David Walters
2024, Nature (634) 875-882
The movement of large amounts of nutrients by migrating animals has ecological benefits for recipient food webs1,2 that may be offset by co-transported contaminants3,4. Salmon spawning migrations are archetypal of this process, carrying marine-derived materials to inland ecosystems where they stimulate local productivity but also enhance contaminant exposure5,6,7. Pacific salmon...
Discerning sediment provenance in the Outer Banks (USA) through detrital zircon geochronology
John W. Counts, Jared T. Gooley, Joshua Long, William H. Craddock, Paul O’Sullivan
2024, Marine Geology (477)
Detrital zircon data from modern barrier island and estuarine environments in the Outer Banks (Atlantic Coast, USA) were statistically compared to sands from nearby rivers to assist in determining source-to-sink pathways. Fluvial samples, collected from near the Fall Line contact...
Body size and early marine conditions drive changes in Chinook salmon productivity across northern latitude ecosystems
Megan L. Feddern, Rebecca Shaftel, Erik R. Schoen, Curry J. Cunningham, Brendan M. Connors, Benjamin A. Staton, Al von Finster, Zachary Liller, Vanessa R. von Biela, Katherine G. Howard
2024, Global Change Biology (30)
Disentangling the influences of climate change from other stressors affecting the population dynamics of aquatic species is particularly pressing for northern latitude ecosystems, where climate-driven warming is occurring faster than the global average. Chinook salmon (Oncorhynchus tshawytscha) in the Yukon-Kuskokwim (YK) region occupy the...
Effects of initial vegetation heterogeneity on competition of submersed and floating macrophytes
Linhao Xu, Don DeAngelis
2024, Mathematical Biosciences and Engineering (21) 7194-7210
Non-spatial models of competition between floating aquatic vegetation (FAV) and submersed aquatic vegetation (SAV) predict a stable state of pure SAV at low total available limiting nutrient level, N, a stable state of only FAV for high N, and alternative stable states for intermediate N, as described by an S-shaped bifurcation curve....
Correlation analysis of groundwater and hydrologic data, Kaloko-Honokōhau National Historical Park, Hawai‘i
Brytne K. Okuhata, Delwyn S. Oki
2024, Scientific Investigations Report 2024-5084
Designated in 1978, Kaloko-Honokōhau National Historical Park is located on the west coast of the Island of Hawaiʻi. The Kaloko-Honokōhau National Historical Park encompasses about 1,200 acres of coastal land and nearshore ecosystems, which include wetlands, anchialine pools (landlocked bodies of brackish water with hydrologic connections to the ocean), fishponds,...
One Health collaboration is more effective than single-sector actions at mitigating SARS-CoV-2 in deer
Jonathan D. Cook, Elias Rosenblatt, Graziella Vittoria DiRenzo, Evan H. Campbell Grant, Brittany A. Mosher, Fernando Arce, Sonja Christensen, Ria R. Ghai, Michael C. Runge
2024, Nature Communications (15)
One Health aims to achieve optimal health outcomes for people, animals, plants, and shared environments. We describe a multisector effort to understand and mitigate SARS-CoV-2 transmission risk to humans via the spread among and between captive and wild white-tailed deer. We first framed a One Health problem with three governance...
Distribution and trends of endemic Hawaiian waterbirds, 1986–2023
P. Marcos Gorresen, Richard J. Camp, Eben H. Paxton
2024, Technical Report HCSU-113
This study updates the status assessment of four endemic endangered Hawaiian waterbird species—ae‘o (Hawaiian stilt, Himantopus mexicanus knudseni), ‘alae ke‘oke‘o (Hawaiian coot, Fulica alai), ‘alae ‘ula (Hawaiian gallinule, Gallinula galeata sandvicensis), and koloa maoli (Hawaiian duck, Anas wyvilliana)—from 1986 to 2016 by incorporating new data from 2017–2023. State-space models, which...
Temperature-driven convergence and divergence of ecohydrological dynamics in the ecosystems of a sky island mountain range
M.D. Petrie, John B. Bradford, Daniel Rodolphe Schlaepfer
2024, Ecohydrology (17)
Forest and woodland decline is predicted to be increasingly influenced by meteorological variation and climate change in the future. By determining how meteorological variation leads to similar versus differing ecohydrological dynamics of forest and woodland ecosystems, we can gain insight on how future climate-driven declines may be realized. We characterized...
Factors affecting the density of Metabetaeus lohena (Decapoda: Alpheidae) at a high-density anchialine pool environment on the Kona Coast of the Island of Hawai‘i
Robert W. Peck, Sarah Nash, Richard J. Camp
2024, Pacific Science (78) 31-50
Caridean shrimps (Caridea) are the dominant macroinvertebrates in most anchialine ecosystems. Hawaiian anchialine ecosystems, primarily composed of shallow surface pools connected to the ocean via hypogeal networks of cracks, tubes, and other voids, support 10 caridean shrimp species, including two federally listed as endangered. Little is known about most of...
A "Region-Specific Model Adaptation (RSMA)" based training data method in large-scale land cover mapping
Congcong Li, George Z. Xian, Suming Jin
2024, Remote Sensing (16)
An accurate and historical land cover monitoring dataset for Alaska could provide fundamental information for a range of studies, such as conservation habitats, biogeochemical cycles, and climate systems, in this distinctive region. This research addresses challenges associated with the extraction of training data for timely and accurate land cover...
Applying portfolio theory to benefit endangered amphibians in coastal wetlands threatened by climate change, high uncertainty, and significant investment risk
Mitchell J. Eaton, Adam Terando, Jaime A. Collazo
2024, Frontiers in Conservation Science (5)
The challenge of selecting strategies to adapt to climate change is complicated by the presence of irreducible uncertainties regarding future conditions. Decisions regarding long-term investments in conservation actions contain significant risk of failure due to these inherent uncertainties. To address this challenge, decision makers need an arsenal of sophisticated...
Shaping the coast: Accounting for the human wildcard in projections of future change
Erika E. Lentz, Gabrielle Wong-Parodi, Sara L. Zeigler, Renee C. Collini, Margaret L. Palmsten, Davina L. Passeri
2024, Earth's Future (12)
Coastal change and evolution are the product of physical drivers (e.g., waves) tightly coupled with human behavior. As climate change impacts intensify, demand is increasing for information on where, when, and how coastal areas may change in the future. Although considerable research investments have been made in understanding the physical...
Predicting characteristic length scales of barrier island segmentation in microtidal environments
Rose Elizabeth Palermo, Andrew D. Ashton, Heidi M. Nepf, Mary Kule, Travis Swanson
2024, Journal of Geophysical Research: Earth Surface (129)
Segmented barrier islands can be found in regions with small tidal ranges. In contrast to tidally dominated barriers, where inlet dynamics are thought to control island length scales, the controls on barrier island length scales in wave-dominated environments have not been quantified. These microtidal barriers typically have...
Projecting mangrove forest resilience to sea-level rise on a Pacific Island: Species dynamics and ecological thresholds
Kevin J. Buffington, Joel A. Carr, Richard Mackenzie, Maybeleen Apwong, Ken Krauss, Karen M. Thorne
2024, Estuaries and Coasts (47) 2174-2189
Mangroves can increase their elevation relative to tidal flooding through biogeomorphic feedbacks but can submerge if rates of sea-level rise are too great. There is an urgent need to understand the vulnerability of mangroves to sea-level rise so local communities and resource managers can implement and prioritize actions. The need...
Long-term monitoring reveals management effects on Prairie Warbler colonization, local extinction, and detection in a Massachusetts pine barren
Andrew B. Gordon Jr., Donovan Drummey, Anthony Tur, Annie E. Curtis, Jacob C. McCumber, Michael E. Akresh, Graziella Vittoria DiRenzo
2024, Northeastern Naturalist (31) 418-434
Habitat management can directly impact Setophaga discolor (Prairie Warbler) abundance and distribution. Despite regional declines, Prairie Warbler populations at Camp Edwards (Bourne, MA) have increased. To investigate habitat-management effects on Prairie Warbler populations at Camp Edwards, we used a dynamic-occupancy model to analyze a long-term monitoring dataset collected across 84 point-count sites...
Special topic—Rapid-response instrumentation
Ashton F. Flinders
2024, Scientific Investigations Report 2024-5062-M
IntroductionBased on the reports of Ewert and others (2005, 2018) and Moran and others (2008), most U.S. volcanoes are currently under-monitored and are likely to remain so until the goals of the National Volcano Early Warning System are fulfilled. In addition, volcanoes determined to have low to moderate threat...
Special topic—Unoccupied aircraft systems
Angela K. Diefenbach
2024, Scientific Investigations Report 2024-5062-L
IntroductionUnoccupied aircraft systems (UAS) increasingly support volcano monitoring and eruption response activities in the United States and abroad (James and others, 2020). Advances in UAS platforms and miniaturization of sensors over the past decade have expanded the use of this technology for a wide range of applications within volcanology...
Special topic—Eruption plumes and clouds
David J. Schneider, Alexa R. Van Eaton
2024, Scientific Investigations Report 2024-5062-J
IntroductionExplosive eruptions create plumes of volcanic ash and gas that can rise more than 30,000 feet (9.1 kilometers [km]) above sea level within minutes of eruption onset. The resulting clouds disperse under prevailing winds and may cause hazardous conditions hundreds to thousands of kilometers from the volcano, including in international...
Monitoring marine eruptions
Gabrielle Tepp
2024, Scientific Investigations Report 2024-5062-I
IntroductionSubmarine volcanoes produce much of the same seismicity and eruptive activity as subaerial volcanoes and can pose hazards to society. Although they can be monitored with similar techniques and methods as described in other chapters of this volume, their submerged location brings unique challenges. This chapter addresses these challenges and...
Ground deformation and gravity for volcano monitoring
Emily K. Montgomery-Brown, Kyle R. Anderson, Ingrid A. Johanson, Michael P. Poland, Ashton F. Flinders
2024, Scientific Investigations Report 2024-5062-D
IntroductionWhen magma accumulates or migrates, it can cause pressurization and related ground deformation. Characterization of surface deformation provides important constraints on the potential for future volcanic activity, especially in combination with seismic activity, gas emissions, and other indicators. A wide variety of techniques and instrument types have been applied to...
Postrelease survival of Eleutherodactylus coqui: Advancing managed translocations as an adaptive tool for climate-vulnerable anurans
Rafael Chaparro, Ana C. Rivera-Burgos, Mitchell J. Eaton, Adam Terando, Eloy Martinez, Jaime A. Collazo
2024, Herpetologica (80) 314-320
Translocating amphibians to alternative, suitable habitat is a climate adaptation strategy aimed at minimizing the risk of extinction due to projected global warming and drying. Projected conditions could undermine their physiological performance, and thus survival and reproduction. Translocations minimize risks of extinction by increasing spatial redundancy across climate-resilient habitats, particularly...
Arctic fishes reveal patterns in radiocarbon age across habitats and with recent climate change
Ashley E. Stanek, Jonathan A. O’Donnell, Michael P. Carey, Sarah M. Laske, Xiaomei Xu, Kenneth H. Dunton, Vanessa R. von Biela
2024, Limnology and Oceanography Letters (9) 796-805
Climate change alters the sources and age of carbon in Arctic food webs by fostering the release of older carbon from degrading permafrost. Radiocarbon (14C) traces carbon sources and age, but data before rapid warming are rare and limit assessments over time. We capitalized on 14C...
New insights on the origin of the Richardson-Richards equation
John R. Nimmo
2024, Hydrological Sciences Journal (69) 2153-2158
The Richardson-Richards equation (RRE), despite known shortcomings especially in regard to preferential flow, provides the basis of the vast majority of unsaturated flow models in use today. L.F. Richardson published this equation in 1922, nine years before L.A. Richards. Whereas Richards approached this problem directly from the groundbreaking developments of...