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Publication Extents

Not all publications have extents, not all extents are completely accurate
Molecular characterization of a novel orthomyxovirus from rainbow and steelhead trout (Oncorhynchus mykiss)
William N. Batts, Scott E. LaPatra, Ryan Katona, Eric Leis, Terry Fei Fan Ng, Marine S.O. Bruieuc, Rachel Breyta, Maureen K. Purcell, Thomas B. Waltzek, Eric Delwart, James Winton
2017, Virus Research (230) 38-49
A novel virus, rainbow trout orthomyxovirus (RbtOV), was isolated in 1997 and again in 2000 from commercially-reared rainbow trout (Oncorhynchus mykiss) in Idaho, USA. The virus grew optimally in the CHSE-214 cell line at 15°C producing a diffuse cytopathic effect; however, juvenile rainbow trout exposed to cell culture-grown virus showed...
A river-scale Lagrangian experiment examining controls on phytoplankton dynamics in the presence and absence of treated wastewater effluent high in ammonium
Tamara E. C. Kraus, Kurt D. Carpenter, Brian A. Bergamaschi, Alexander Parker, Elizabeth B. Stumpner, Bryan D. Downing, Nicole Travis, Frances Wilkerson, Carol Kendall, Timothy Mussen
2017, Limnology and Oceanography (62) 1234-1253
Phytoplankton are critical component of the food web in most large rivers and estuaries, and thus identifying dominant controls on phytoplankton abundance and species composition is important to scientists, managers, and policymakers. Recent studies from a variety of systems indicate that ammonium ( NH+4) in treated wastewater effluent decreases primary...
Early detection monitoring for larval dreissenid mussels: How much plankton sampling is enough?
Timothy D. Counihan, Stephen M. Bollens
2017, Environmental Monitoring and Assessment (189) 1-14
The development of quagga and zebra mussel (dreissenids) monitoring programs in the Pacific Northwest provides a unique opportunity to evaluate a regional invasive species detection effort early in its development. Recent studies suggest that the ecological and economic costs of a dreissenid infestation in the Pacific Northwest of the USA...
Trophic interactions and consumption rates of subyearling Chinook Salmon and nonnative juvenile American Shad in Columbia River reservoirs
Craig A. Haskell, David A. Beauchamp, Stephen M Bollins
2017, Transactions of the American Fisheries Society (146) 291-298
We used a large lampara seine coupled with nonlethal gastric lavage to examine the diets and estimate consumption rates of subyearling Chinook Salmon Oncorhynchus tshawytscha during July and August 2013. During August we also examined the diet and consumption rates of juvenile American Shad Alosa sapidissima, a potential competitor of...
Gravitational body forces focus North American intraplate earthquakes
William Brower Levandowski, Mark Zellman, Richard W. Briggs
2017, Nature Communications (8)
Earthquakes far from tectonic plate boundaries generally exploit ancient faults, but not all intraplate faults are equally active. The North American Great Plains exemplify such intraplate earthquake localization, with both natural and induced seismicity generally clustered in discrete zones. Here we use seismic velocity, gravity and topography to generate a...
West Africa land use and land cover time series
Suzanne E. Cotillon
2017, Fact Sheet 2017-3004
Started in 1999, the West Africa Land Use Dynamics project represents an effort to map land use and land cover, characterize the trends in time and space, and understand their effects on the environment across West Africa. The outcome of the West Africa Land Use Dynamics project is the production...
The landscapes of West Africa—40 years of change
Suzanne E. Cotillon
2017, Fact Sheet 2017-3005
What has driven changes in land use and land cover in West Africa over the past 40 years? What trends or patterns can be discerned in those changes? To answer these questions, the U.S. Geological Survey West Africa Land Use Dynamics project partnered with the Permanent Interstate Committee for Drought...
Saltwater intrusion in the Floridan aquifer system near downtown Brunswick, Georgia, 1957–2015
Gregory S. Cherry, Michael Peck
2017, Open-File Report 2017-1010
IntroductionThe Floridan aquifer system (FAS) consists of the Upper Floridan aquifer (UFA), an intervening confining unit of highly variable properties, and the Lower Floridan aquifer (LFA). The UFA and LFA are primarily composed of Paleocene- to Oligocene-age carbonate rocks that include, locally, Upper Cretaceous rocks. The FAS extends from coastal...
A methodology for modeling barrier island storm-impact scenarios
Rangley C. Mickey, Joseph W. Long, Nathaniel G. Plant, David M. Thompson, P. Soupy Dalyander
2017, Open-File Report 2017-1009
A methodology for developing a representative set of storm scenarios based on historical wave buoy and tide gauge data for a region at the Chandeleur Islands, Louisiana, was developed by the U.S. Geological Survey. The total water level was calculated for a 10-year period and analyzed against existing topographic data...
Controls on pore types and pore-size distribution in the Upper Triassic Yanchang Formation, Ordos Basin, China: Implications for pore-evolution models of lacustrine mudrocks
Lucy T. Ko, R. R. Loucks, Kitty L. Milliken, Quansheng Liang, Tongwei Zhang, Xun Sun, Paul C. Hackley, Stephen C. Ruppel, Sheng Peng
2017, Interpretation (5) SF127-SF148
Our main objectives are to (1) learn if pore-evolution models developed from marine mudrocks can be directly applied to lacustrine mudrocks, (2) investigate what controls the different pore types and sizes of Chang 7 organic matter (OM)-rich argillaceous mudstones of the Upper Triassic Yanchang Formation, and (3) describe the texture, fabric, mineralogy, and...
Flood-inundation maps for the Big Blue River at Shelbyville, Indiana
Kathleen K. Fowler
2017, Scientific Investigations Report 2016-5166
Digital flood-inundation maps for a 4.1-mile reach of the Big Blue River at Shelbyville, Indiana, were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The floodinundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site...
Hypsometric control on glacier mass balance sensitivity in Alaska and northwest Canada
Daniel Mcgrath, Louis C. Sass, Shad O’Neel, Anthony A. Arendt, C. Kienholz
2017, Earth's Future (5) 324-336
Glacier hypsometry provides a first‐order approach for assessing a glacier's response to climate forcings. We couple the Randolph Glacier Inventory to a suite of in situ observations and climate model output to examine potential change for the ∼27,000 glaciers in Alaska and northwest Canada through the end of the 21st...
Evaluation of nutria (Myocastor coypus) detection methods in Maryland, USA
Margaret A. Pepper, Valentine Herrmann, James E. Hines, James D. Nichols, Stephen R Kendrot
2017, Biological Invasions (19) 831-841
Nutria (Myocaster coypus), invasive, semi-aquatic rodents native to South America, were introduced into Maryland near Blackwater National Wildlife Refuge (BNWR) in 1943. Irruptive population growth, expansion, and destructive feeding habits resulted in the destruction of thousands of acres of emergent marshes at and surrounding BNWR. In 2002, a...
Testing model parameters for wave‐induced dune erosion using observations from Hurricane Sandy
Jacquelyn R. Overbeck, Joseph W. Long, Hilary F. Stockdon
2017, Geophysical Research Letters (44) 937-945
Models of dune erosion depend on a set of assumptions that dictate the predicted evolution of dunes throughout the duration of a storm. Lidar observations made before and after Hurricane Sandy at over 800 profiles with diverse dune elevations, widths, and volumes are used to quantify specific dune erosion model...
Neisseria arctica sp. nov. isolated from nonviable eggs of greater white-fronted geese (Anser albifrons) in Arctic Alaska
Cristina M. Hansen, Elizabeth Himschoot, Rebekah F. Hare, Brandt W. Meixell, Caroline R. Van Hemert, Karsten Hueffer
2017, International Journal of Systematic and Evolutionary Microbiology (67) 1115-1119
During the summers of 2013 and 2014, isolates of a novel Gram-negative coccus in the Neisseria genus were obtained from the contents of nonviable greater white-fronted goose (Anser albifrons) eggs on the Arctic Coastal Plain of Alaska. We used a polyphasic approach to determine whether these isolates represent a novel...
Potential influence of wildfire in modulating climate-induced forest redistribution in a central Rocky Mountain landscape
John L. Campbell, Douglas J. Shinneman
2017, Ecological Processes (6) 1-17
IntroductionClimate change is expected to impose significant tension on the geographic distribution of tree species. Yet, tree species range shifts may be delayed by their long life spans, capacity to withstand long periods of physiological stress, and dispersal limitations. Wildfire could theoretically break this biological...
Hurricane Sandy washover deposits on Fire Island, New York
SeanPaul M. La Selle, Brent D. Lunghino, Bruce E. Jaffe, Guy Gelfenbaum, Pedro J.M. Costa
2017, Open-File Report 2017-1014
Washover deposits on Fire Island, New York, from Hurricane Sandy in 2012 were investigated a year after the storm to document the sedimentary characteristics of hurricane washover features. Sediment data collected in the field includes stratigraphic descriptions and photos from trenches, bulk sediment samples, U-channels, and gouge and push cores....
Leaching of trace elements from Pittsburgh coal mill rejects compared with coal combustion products from a coal-fired power plant in Ohio, USA
Kevin B. Jones, Leslie F. Ruppert
2017, International Journal of Coal Geology (171) 130-141
We investigated the leachability of elements from mill rejects from the high-sulfur, bituminous Upper Pennsylvanian Pittsburgh coal, using the synthetic groundwater leaching procedure (SGLP), long-term leaching (LTL), and the U.S. Environmental Protection Agency's (EPA's) toxicity characteristic leaching procedure (TCLP), and compared their leaching behavior with that of three coal combustion products (CCPs)—bottom ash, economizer fly ash,...
Refining previous estimates of groundwater outflows from the Medina/Diversion Lake system, San Antonio area, Texas
Richard N. Slattery, William H. Asquith, John D. Gordon
2017, Fact Sheet 2017-3008
IntroductionIn 2016, the U.S. Geological Survey (USGS), in cooperation with the San Antonio Water System, began a study to refine previously derived estimates of groundwater outflows from Medina and Diversion Lakes in south-central Texas near San Antonio. When full, Medina and Diversion Lakes (hereinafter referred to as the Medina/Diversion Lake...
Mapping land cover through time with the Rapid Land Cover Mapper—Documentation and user manual
Suzanne E. Cotillon, Melissa L. Mathis
2017, Open-File Report 2017-1012
The Rapid Land Cover Mapper is an Esri ArcGIS® Desktop add-in, which was created as an alternative to automated or semiautomated mapping methods. Based on a manual photo interpretation technique, the tool facilitates mapping over large areas and through time, and produces time-series raster maps and associated statistics that characterize...
Preferential flow, diffuse flow, and perching in an interbedded fractured-rock unsaturated zone
John R. Nimmo, Kaitlyn M Creasey, Kimberlie Perkins, Benjamin B. Mirus
2017, Hydrogeology Journal (25) 421-444
Layers of strong geologic contrast within the unsaturated zone can control recharge and contaminant transport to underlying aquifers. Slow diffuse flow in certain geologic layers, and rapid preferential flow in others, complicates the prediction of vertical and lateral fluxes. A simple model is presented, designed to use limited geological site...
Fire and the distribution and uncertainty of carbon sequestered as above-ground tree biomass in Yosemite and Sequoia & Kings Canyon National Parks
James A. Lutz, John R. Matchett, Leland W. Tarnay, Douglas F. Smith, Kendall M.L. Becker, Tucker J. Furniss, Matthew L. Brooks
2017, Land (6)
Fire is one of the principal agents changing forest carbon stocks and landscape level distributions of carbon, but few studies have addressed how accurate carbon accounting of fire-killed trees is or can be. We used a large number of forested plots (1646), detailed selection of species-specific and location-specific allometric equations,...
Aridity increases below-ground niche breadth in grass communities
Bradley J. Butterfield, John B. Bradford, Seth M. Munson, Jennifer R. Gremer
2017, Plant Ecology (218) 385-394
Aridity is an important environmental filter in the assembly of plant communities worldwide. The extent to which root traits mediate responses to aridity, and how they are coordinated with leaf traits, remains unclear. Here, we measured variation in root tissue density (RTD), specific root length (SRL), specific leaf area (SLA),...
Hydrologic, land cover, and seasonal patterns of waterborne pathogens in Great Lakes tributaries
Peter L. Lenaker, Steven R. Corsi, Mark A. Borchardt, Susan K. Spencer, Austin K. Baldwin, Michelle A. Lutz
2017, Water Research (113) 11-21
Great Lakes tributaries are known to deliver waterborne pathogens from a host of sources. To examine the hydrologic, land cover, and seasonal patterns of waterborne pathogens (i.e. protozoa (2), pathogenic bacteria (4) human viruses, (8) and bovine viruses (8)) eight rivers were monitored in the Great Lakes Basin over 29...