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Publications for publication type Article and publication subtype Journal Article

• Molecular sexing of birds using quantitative PCR (qPCR) of sex-linked genes and logistic regression models, 2024, Molecular Ecology Resources (24) - 4
• A minimally invasive, field-applicable CRISPR/Cas biosensor to aid in the detection of Pseudogymnoascus destructans, the causative fungal agent of white-nose syndrome in bats, 2024, Molecular Ecology Resources (24) - 2
• A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis), 2023, Molecular Ecology Resources
• Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding, 2023, Molecular Ecology Resources (00) -
• Toward absolute abundance for conservation applications: Estimating the number of contributors via microhaplotype genotyping of mixed-DNA sample, 2023, Molecular Ecology Resources (00) -
• A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida), 2023, Molecular Ecology Resources (23) - 6
• Landscape transcriptomics as a tool for addressing global change effects across diverse species, 2023, Molecular Ecology Resources
• Haploid gynogens facilitate disomic marker development in paleotetraploid sturgeons, 2022, Molecular Ecology Resources
• Time to get real with qPCR controls: The frequency of sample contamination and the informative power of negative controls in environmental DNA studies, 2022, Molecular Ecology Resources (22) - 4
• Detecting population declines via monitoring the effective number of breeders (Nb), 2021, Molecular Ecology Resources (21) - 2
• Attack of the PCR clones: Rates of clonality have little effect on RAD-seq genotype calls, 2020, Molecular Ecology Resources (20) - 1
• The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era, 2019, Molecular Ecology Resources (19) - 4
• eDNAoccupancy: An R package for multi-scale occupancy modeling of environmental DNA data, 2017, Molecular Ecology Resources (18) - 2
• Methodological considerations for detection of terrestrial small-body salamander eDNA and implications for biodiversity conservation, 2017, Molecular Ecology Resources (17) - 6
• Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA, 2017, Molecular Ecology Resources (17) - 2
• Detecting the movement and spawning activity of bigheaded carps with environmental DNA, 2016, Molecular Ecology Resources (16) - 4
• SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate, 2016, Molecular Ecology Resources (16) - 5
• A likelihood-based approach for assessment of extra-pair paternity and conspecific brood parasitism in natural populations, 2015, Molecular Ecology Resources (15) - 1
• Transcriptome resources for the frogs Lithobates clamitans and Pseudacris regilla, emphasizing antimicrobial peptides and conserved loci for phylogenetics, 2014, Molecular Ecology Resources (14) - 1
• Factors influencing detection of eDNA from a stream-dwelling amphibian, 2013, Molecular Ecology Resources (14) - 1
• RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays, 2012, Molecular Ecology Resources (12) - 4
• Effects of sample size, number of markers, and allelic richness on the detection of spatial genetic pattern, 2012, Molecular Ecology Resources (12) - 2
• GONe: Software for estimating effective population size in species with generational overlap, 2012, Molecular Ecology Resources (12) - 1
• Effects of sample size, number of markers, and allelic richness on the detection of spatial genetic pattern, 2012, Molecular Ecology Resources (12) - 2
• Gene transcription in sea otters (Enhydra lutris); development of a diagnostic tool for sea otter and ecosystem health, 2012, Molecular Ecology Resources (12) - 1
• Novel primers for complete mitochondrial cytochrome b genesequencing in mammals, 2011, Molecular Ecology Resources (12) - 2
• Genetic landscapes GIS Toolbox: Tools to map patterns of genetic divergence and diversity., 2011, Molecular Ecology Resources (11) - 1
• A noninvasive, direct real-time PCR method for sex determination in multiple avian species, 2011, Molecular Ecology Resources (11) - 2
• Multiplexed microsatellite recovery using massively parallel sequencing, 2011, Molecular Ecology Resources (11) - 6
• Characterization of highly informative cross-species microsatellite panels for the Australian dugong (Dugong dugon) and Florida manatee (Trichechus manatus latirostris) including five novel primers, 2010, Molecular Ecology Resources (10) - 2
• Development of a molecular diagnostic system to discriminate Dreissena polymorpha (zebra mussel) and Dreissena bugensis (quagga mussel), 2010, Molecular Ecology Resources (10) - 1
• Tetranucleotide microsatellite loci from the black bear (Ursus americanus), 2009, Molecular Ecology Resources (9) - 1
• Isolation and characterization of microsatellite loci for alligator gar (Atractosteus spatula) and their variability in two other species (Lepisosteus oculatus and L. osseus) of Lepisosteidae, 2009, Molecular Ecology Resources (9) - 3
• Identification of co-occurring Branchinecta fairy shrimp species from encysted embryos using multiplex polymerase chain reaction, 2009, Molecular Ecology Resources (9) - 3
• Isolation and characterization of microsatellite loci in the whale shark (Rhincodon typus), 2009, Molecular Ecology Resources (9) - 3
• Polymorphic microsatellite loci for the sand pocket mouse Chaetodipus arenarius, an endemic from the Baja California Peninsula, 2009, Molecular Ecology Resources (9) - 1
• Development of nine new microsatellite loci for the American beaver, Castor canadensis (Rodentia: Castoridae), and cross-species amplification in the European beaver, Castor fiber, 2009, Molecular Ecology Resources (9) - 2
• Microsatellite markers for the endangered Roanoke logperch, Percina rex (Percidae) and their potential utility for other darter species, 2008, Molecular Ecology Resources (8) - 4
• Development of new microsatellite loci and multiplex reactions for muskellunge (Esox masquinongy), 2008, Molecular Ecology Resources (8) - 4
• Characterization of 13 microsatellite loci for the deep-sea coral, Lophelia pertusa (Linnaeus 1758), from the western North Atlantic Ocean and Gulf of Mexico, 2008, Molecular Ecology Resources (8) - 5
• Microsatellite DNA primers for the candy darter, Etheostoma osburni and variegate darter, Etheostoma variatum, and cross-species amplification in other darters (Percidae), 2008, Molecular Ecology Resources (8) - 2
• Isolation and characterization of microsatellite loci from the Arctic cisco (Coregonus autumnalis), 2008, Molecular Ecology Resources (8) - 2
• Microsatellite loci for distinguishing spotted owls (Strix occidentalis), barred owls (Strix varia), and their hybrids, 2007, Molecular Ecology Resources (7) - 2