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Publication Extents

Not all publications have extents, not all extents are completely accurate
A review of Bayesian belief network models as decision-support tools for wetland conservation: Are water birds potential umbrella taxa?
Maggie P. MacPherson, Elisabeth B. Webb, Andy Raedeke, Doreen C. Mengel, Frank Nelson
2018, Biological Conservation (226) 215-223
Creative approaches to identifying umbrella species hold promise for devising effective surrogates of ecological communities or ecosystems. However, mechanistic niche models that predict range or habitat overlap among species may yet lack development. We reviewed literature on taxon-centered Bayesian belief network (BBN) models to explore a novel approach to identify...
Estimating distemper virus dynamics among wolves and grizzly bears using serology and Bayesian state‐space models
Paul C. Cross, Frank T. van Manen, Mafalda Viana, Emily S. Almberg, Daniel Bachen, Ellen E. Brandell, Mark A. Haroldson, Peter J. Hudson, Daniel R. Stahler, Douglas W. Smith
2018, Ecology and Evolution (8) 8726-8735
Many parasites infect multiple hosts, but estimating the transmission across host species remains a key challenge in disease ecology. We investigated the within and across host species dynamics of canine distemper virus (CDV) in grizzly bears (Ursus arctos) and wolves (Canis lupus) of the Greater Yellowstone Ecosystem (GYE). We hypothesized...
Global and Arctic climate sensitivity enhanced by changes in North Pacific heat flux
Summer K. Praetorius, Maria A. Rugenstein, Geeta Persad, Ken Caldeira
2018, Nature Communications (9) 1-12
Arctic amplification is a consequence of surface albedo, cloud, and temperature feedbacks, as well as poleward oceanic and atmospheric heat transport. However, the relative impact of changes in sea surface temperature (SST) patterns and ocean heat flux sourced from different regions on Arctic temperatures are not well constrained. We modify...
Spatial relationships of levees and wetland systems within floodplains of the Wabash Basin, USA
Ryan R. Morrison, Erin N. Bray, Fernando Nardi, Antonio Annis, Quan Dong
2018, Journal of the American Water Resources Association (54) 934-948
Given the unique biogeochemical, physical, and hydrologic services provided by floodplain wetlands, proper management of river systems should include an understanding of how floodplain modifications influence wetland ecosystems. The construction of levees can reduce river–floodplain connectivity, yet it is unclear how levees affect wetlands within floodplains, let alone the cumulative impacts...
Probabilistic models of seafloor composition using multispectral acoustic backscatter: The benthic detectorists
Daniel D. Buscombe, Paul E. Grams, Matthew Kaplinski
2018, Conference Paper
We describe and compare two probabilistic models for task-specific seafloor characterization based on multispectral backscatter. We examine whether generative or discriminative approaches to supervised seafloor characterization do better at harnessing the greatly increased information about seafloor substrate composition that is encoded in the backscattering response across multiple frequencies. A Gaussian mixture model (GMM) is proposed as a...
Promoting synergy in the innovative use of environmental data—Workshop summary
Healy Hamilton, Gerald F. Guala, Annie Simpson
2018, Open-File Report 2018-1104
From December 2 to 4, 2015, NatureServe and the U.S. Geological Survey organized and hosted a biodiversity and ecological informatics workshop at the U.S. Department of the Interior in Washington, D.C. The workshop objective was to identify user-driven future directions and areas of collaboration in advanced applications of environmental data...
Herbicides and herbivory interact to drive plant community and crop‐tree establishment
Thomas D. Stokely, Jake Verschuyl, Joan Hagar, Matthew G. Betts
2018, Ecological Applications (28) 2011-2023
Land management practices often directly alter vegetation structure and composition, but the degree to which ecological processes such as herbivory interact with management to influence biodiversity is less well understood. We hypothesized that large herbivores compound the effects of intensive forest management on early seral plant communities and plantation establishment...
An interferometric synthetic aperture radar (InSAR) habitat suitability model to identify overwinter conditions for coregonine whitefishes in Arctic lagoons
Marguerite Tibbles, Jeffrey A. Falke, Andrew R. Mahoney, Martin D. Robards, Andrew C. Seitz
2018, Transactions of the American Fisheries Society (147) 1167-1178
Lagoons provide critical habitats for many fishes, including coregonine whitefishes, which are a mainstay in many subsistence fisheries of rural communities in Arctic Alaska. Despite their importance, little is known about the overwintering habits of whitefishes in Arctic Alaska due to the challenges associated with sampling during winter. We developed...
An evaluation of three fish surveys in the San Francisco Estuary, 1995–2015
James T. Peterson, Miguel F. Barajas
2018, San Francisco Estuary and Watershed Science (16)
Resource managers rely on long-term monitoring surveys conducted in the San Francisco Estuary to evaluate the status and trends of resident fish populations in this important region. These surveys are potentially confounded because of the incomplete detection of individuals and species, the magnitude of which is often related to the...
Near-solidus melts of MORB + 4 wt% H2O at 0.8 – 2.8 GPa applied to issues of subduction magmatism and continent formation
Thomas W. Sisson, Peter B. Kelemen
2018, Contributions to Mineralogy and Petrology (173)
Experiments on MORB + 4 wt% H2O at 0.8–2.8 GPa and 700–950 °C (Liu in High pressure phase equilibria involving the amphibolite–eclogite transformation. PhD dissertation, Stanford University, Stanford, California, 1997; Liu et al. in Earth Planet Sci Lett 143:161–171, 1996) were reexamined for their major and trace element melt compositions and melting relations. Degree of...
Millennial soil retention of terrestrial organic matter deposited in the Bengal Fan
Katherine L. French, Christopher Hein, Negar Haghipour, Lukas Wacker, Hermann Kudrass, Timothy Eglinton, Valier Galy
2018, Scientific Reports (8) 1-8
The abundance of organic carbon (OC) in vegetation and soils (~2,600 PgC) compared to carbon in the atmosphere (~830 PgC) highlights the importance of terrestrial OC in global carbon budgets. The residence time of OC in continental reservoirs, which sets the rates of carbon exchange between land and atmosphere, represents...
Effect of spatial and temporal scale on simulated groundwater recharge investigations
Fred D. Tillman, Tom Pruitt, Subhrendu Gangopadhyay
2018, Advances in Water Resources (119) 257-270
Hydrologic model input datasets such as climate, land use, elevation, soil, and geology information are available in a range of scales for use in water resources investigations. Smaller spatial and temporal scale input data allow groundwater recharge models to simulate more physically realistic processes and presumably result in more accurate...
Implications of spatially variable costs and habitat conversion risk in landscape-scale conservation planning
Max Post van der Burg, Neil Chartier, Ryan G. Drum
2018, Journal of Fish and Wildlife Management (9) 402-414
“Strategic habitat conservation” refers to a process used by the U.S. Fish and Wildlife Service to develop cost-efficient strategies for conserving wildlife populations and their habitats. Strategic habitat conservation focuses on resolving uncertainties surrounding habitat conservation to meet specific wildlife population objectives (i.e., targets) and...
Eruptive history of Middle Sister, Oregon Cascades-Product of a late Pleistocene eruptive episode
Andrew T. Calvert, Judith E. Fierstein, Wes Hildreth
2018, Geosphere (14) 2118-2139
New mapping, geochemistry, and argon geochronology illuminate a brief, remarkably silicic episode set in a mafic segment of the Cascade arc. Middle Sister was constructed during a 35-k.y. episode in the late Pleistocene from mafic, intermediate, and silicic eruptions adjacent to the primarily rhyolitic South Sister. Eruptions in the Three...
Slab2, a comprehensive subduction zone geometry model
Gavin P. Hayes, Ginevra Moore, Daniel E. Portner, Mike Hearne, Hanna E. Flamme, Maria Furtney, Gregory M. Smoczyk
2018, Science (362) 58-61
Subduction zones are home to the most seismically active faults on the planet. The shallow megathrust interfaces of subduction zones host our largest earthquakes and are likely the only faults capable of magnitude 9+ ruptures. Despite these facts, our knowledge of subduction zone geometry—which likely plays a key role in...
Manure and fertilizer inputs to land in the Chesapeake Bay watershed, 1950–2012
Jennifer L. Keisman, Olivia Devereux, Andrew E. LaMotte, Andrew J. Sekellick, Joel D. Blomquist
2018, Scientific Investigations Report 2018-5022
Understanding changing nutrient concentrations in surface waters requires quantitative information on changing nutrient sources in contributing watersheds. For example, the proportion of nutrient inputs reaching streams and rivers is directly affected by when and where those nutrients enter the landscape. The goal of this report is to contribute to the...
Geologic framework and hydrogeology of the Rio Rico and Nogales 7.5’ quadrangles, upper Santa Cruz Basin, Arizona, with three-dimensional hydrogeologic model
William R. Page, Mark W. Bultman, D. Paco VanSistine, Christopher M. Menges, Floyd Gray, Michael P. Pantea
2018, Scientific Investigations Report 2018-5062
Rapid population growth and declining annual recharge to aquifers in the upper Santa Cruz Basin area of southern Arizona, have increased the demand for additional groundwater resources. This demand is predicted to escalate in the future because of higher temperatures, longer droughts, less aquifer recharge, and decreased river and stream...
Hydraulic modeling and flood-inundation mapping for the Huron River and Ore Lake Tributary, Livingston County, Michigan
Julia G. Prokopec
2018, Scientific Investigations Report 2018-5048
Digital flood-inundation maps for an 8-mile (mi) reach of the Huron River near Hamburg, Michigan (station number 04172000), from downstream of Rickett Road to Strawberry Lake, were created by the U.S. Geological Survey (USGS), in cooperation with Green Oak and Hamburg Townships, Michigan, and the U.S. Army Corps of Engineers....
Assessment of water resources in areas that affect the habitat of the endangered Hine’s emerald dragonfly in the Lower Des Plaines River Valley, Illinois
Robert T. Kay, Amy M. Gahala, Clinton Bailey
2018, Scientific Investigations Report 2018-5074
Review of previous investigations indicates that potential decreases in groundwater recharge and increased groundwater extraction in the vicinity of the Lower Des Plaines River Valley in Will County, Illinois, may reduce the amount of groundwater flow in the Silurian aquifer in this area. Groundwater discharge from the Silurian aquifer to...
Effects of local shoreline and subestuary watershed condition on waterbird community integrity: Influences of geospatial scale and season in the Chesapeake Bay
Diann J. Prosser, Jessica L. Nagel, Shay Howlin, Paul Marban, Daniel D. Day, R. Michael Erwin
2018, Estuaries and Coasts (41) 207-222
In many coastal regions throughout the world, there is increasing pressure to harden shorelines to protect human infrastructures against sea level rise, storm surge, and erosion. This study examines waterbird community integrity in relation to shoreline hardening and land use characteristics at three geospatial scales: (1) the shoreline scale characterized...
Using partial aggregation in spatial capture recapture
Cyril Milleret, Pierre Dupont, Henrik Broseth, Jonas Kindberg, J. Andrew Royle, Richard Bischof
2018, Methods in Ecology and Evolution (9) 1896-1907
Spatial capture–recapture (SCR) models are commonly used for analysing data collected using noninvasive genetic sampling (NGS). Opportunistic NGS often leads to detections that do not occur at discrete detector locations. Therefore, spatial aggregation of individual detections into fixed detectors (e.g., centre of grid cells) is an option to increase...
Real-time decision-making during emergency disease outbreaks
William J. M. Probert, Chris P. Jewell, Marleen Werkman, Christopher.J. Fonnesbeck, Yoshitaka Goto, Michael C. Runge, Satoshi Sekiguchi, Katriona Shea, Matt J. Keeling, Matthew J. Ferrari, Michael J. Tildesley
2018, PLOS Computational Biology (14) 1-18
In the event of a new infectious disease outbreak, mathematical and simulation models are commonly used to inform policy by evaluating which control strategies will minimize the impact of the epidemic. In the early stages of such outbreaks, substantial parameter uncertainty may limit the ability of models to provide accurate...
Impacts of coastal land use and shoreline armoring on estuarine ecosystems: An introduction to a special issue
Diann J. Prosser, Thomas E. Jordan, Jessica L. Nagel, Rochelle D. Seitz, Donald E. Weller, Dennis F. Whigham
2018, Estuaries and Coasts (41) 2-18
The nearshore land-water interface is an important ecological zone that faces anthropogenic pressure from development in coastal regions throughout the world. Coastal waters and estuaries like Chesapeake Bay receive and process land discharges loaded with anthropogenic nutrients and other pollutants that cause eutrophication, hypoxia, and other damage to shallow-water ecosystems....
The case for mean rupture distance in ground‐motion estimation
Eric M. Thompson, Annemarie S. Baltay Sundstrom
2018, Bulletin of the Seismological Society of America (108) 2462-2477
This article advocates for the use of mean rupture distances that we contend are more physically representative of the distance to an earthquake and are simpler than minimum distances. Many current ground‐motion models (GMMs) rely on numerous modifications of minimum rupture distances to accurately model near‐source ground motions. These modifications,...
Broadband synthetic seismograms for magnitude 9 earthquakes on the Cascadia megathrust based on 3D simulations and stochastic synthetics, part 1: Methodology and overall results
Arthur D. Frankel, Erin A. Wirth, Nasser A. Marafi, John Vidale, William J. Stephenson
2018, Bulletin of the Seismological Society of America (108) 2347-2369
We have produced a large set of broadband (0–10 Hz) synthetic seismograms for Mw 9.0 earthquakes on the Cascadia megathrust by combining synthetic seismograms derived from 3D finite‐difference simulations (⁠≤1 Hz⁠) with finite‐source, stochastic synthetics (⁠≥1 Hz⁠). We used a compound rupture model consisting of high stress drop M<span class="inline-formula...