A low-cost approach to monitoring streamflow dynamics in small, headwater streams using timelapse imagery and a deep learning model
Phillip J. Goodling, Jennifer H. Fair, Amrita Gupta, Jeffrey D. Walker, Todd Dubreuil, Michael J. Hayden, Benjamin Letcher
2025, Preprint
Despite their ubiquity and importance as freshwater habitat, small headwater streams are under monitored by existing stream gage networks. To address this gap, we describe a low-cost, non-contact, and low-effort method that enables organizations to monitor streamflow dynamics in small headwater streams. The method uses a camera to capture repeat...
Multi-scale geophysical imaging of a hydrothermal system in Yellowstone National Park, USA
Sylvain Pasquet, W. Steven Holbrook, Bradley J. Carr, Neil Terry, Martin A. Briggs, Carol A. Finn, Paul A. Bedrosian, Esben Auken, Jesper Pedersen, Pradip Kumar Maurya, Kenneth Sims
2025, JGR Solid Earth (130)
Little is known about the local plumbing systems that fuel Yellowstone’s famous hot springs, geysers and mud pots. A multi-method, multi-scale geophysical investigation was carried out in the Obsidian Pool Thermal Area (OPTA) to: (i) delineate the lateral extent of the hydrothermal area and associated surface features; (ii) estimate the...
Sulfate reduction drives elevated methylmercury formation in water column of eutrophic freshwater lake
Benjamin D. Peterson, Sarah E. Janssen, Brett A. Poulin, Jacob M. Ogorek, Amber White, Elizabeth A. McDaniel, Robert A. Marick, Grace Jane Armstrong, Nicholas D. Scheel, Michael T. Tate, David P. Krabbenhoft, Katherine D. McMahon
2025, Environmental Science and Technology (59) 6799-6811
Mercury (Hg) contamination of aquatic food webs is controlled in part by the formation and accumulation of toxic and bioaccumulative methylmercury (MeHg). MeHg production is mediated by metabolically diverse microorganisms carrying the hgcAB gene pair, while the demethylation reaction is mediated by several biotic and abiotic processes. However, the relative importance...
Assessing microplastics, per- and polyfluoroalkyl substances (PFAS), and other contaminants of global concern in wadable agricultural streams
Shannon M. Meppelink, Dana W. Kolpin, Gregory H. LeFevre, David M. Cwiertny, Carrie E. Givens, Lee A. Green, Laura E. Hubbard, Luke Iwanowicz, Rachael F. Lane, Alyssa L. Mianecki, Padraic S. O’Shea, Clayton D. Raines, John W. Scott, Darrin A. Thompson, Michaelah C. Wilson, James L. Gray
2025, Environmental Science: Processes & Impacts (27) 1401-1422
Microplastics, per- and polyfluoroalkyl substances (PFAS), antibiotic resistance genes (ARGs), pharmaceuticals and personal care products (PPCPs), and pesticides may lead to unintended environmental contamination through many pathways in multiple matrices. This statewide, multi-matrix study of contaminants of global concern (CGCs) in agricultural streams across Iowa (United States) is the first...
A partnership between the USGS and the Klamath Tribes to apply structured decision making for chronic wasting disease management
Margaret C. McEachran, Katie M. Guntly-Yancey, Richard Eugene Waggaman Berl, Donald Gentry, Michael C. Runge, Carl White, Jonathan D. Cook
2025, Fact Sheet 2025-3012
Project Overview: The Klamath Tribes (TKT) are the Klamath, Modoc, and Yahooskin Paiute peoples, and are the first peoples of the land, having lived in ancestral lands of Oregon and California since time immemorial. Members of TKT have rights to hunt, fish, trap, and gather, including the harvest of mule...
A trend analysis and model comparison of total phosphorus concentrations and loads in the Boise River near Parma, southwestern Idaho, water years 2003–21
Tyler V. King, Alysa M. Yoder
2025, Scientific Investigations Report 2024-5110
Total phosphorus (TP) concentrations and loads in the Boise River near Parma, Idaho, were examined to identify changes by month over a 19-year period from water year 2003 through water year 2021 and to evaluate the performance of three common water-quality models. Mean annual TP concentrations and loads were estimated...
System characterization report on Resourcesat-2A Linear Imaging Self Scanning-4 sensor
Mahesh Shrestha, Aparajithan Sampath, Minsu Kim, Seonkyung Park, Jeffrey Clauson
2025, Open-File Report 2021-1030-U
Executive Summary This report documents the system characterization of the Indian Space Research Organisation Resourcesat-2A Linear Imaging Self Scanning-4 (LISS–4) sensor. It is part of a series of system characterization reports produced by the U.S. Geological Survey Earth Resources Observation and Science Cal/Val Center of Excellence. These reports describe the methodology...
Consistent individual differences and plasticity in migration behaviour of three North American ungulates
Michel P. Laforge, Eric Vander Wal, Quinn M.R. Webber, Chris Geremia, Matthew Kauffman, Douglas E. McWhirter, Arthur Middleton, Tony W. Mong, Kevin L. Monteith, Anna C. Ortega, Hall Sawyer, Jerod A. Merkle
2025, Article
Migratory herbivores often time spring migration to coincide with the green-up of plants. When the timing of green-up changes across years, herbivores can respond directly and be plastic to changing conditions or populations may adapt via inherent differences among individuals that may allow for an evolutionary response. We quantified plasticity...
Nitrate loads and concentrations from forested watersheds and implications for Long Island Sound
Alana B. Spaetzel, James B. Shanley, Leslie A. DeSimone, John R. Mullaney
2025, JGR Biogeosciences (130)
Reduction in point sources of nitrogen has led to improvement in water quality of the Long Island Sound (LIS) since 2000, but changes in nonpoint sources are less clear. A significant yet poorly quantified nonpoint nitrogen source is the forested landscape. Because a large proportion of the LIS basin is...
Reconstructing relative abundance indices for Atlantic sturgeon using hierarchical ecological models
Daniel S. Stich, Dewayne Fox, Amanda Higgs, David C. Kazyak, Richard Pendleton, Suresh A Sethi
2025, Transactions of the American Fisheries Society (154) 134-142
ObjectiveThe Atlantic Sturgeon Acipenser oxyrinchus is a wide-ranging, long-lived diadromous fish that is endangered in most of its range. Our objective was to develop and apply long-term, detection-corrected indices of relative abundance for juvenile and adult Atlantic Sturgeon in the Hudson River, New York, United States, to support...
Too much and not enough data: Challenges and solutions for generating information in freshwater research and monitoring
Adrianne P. Smits, Ed K Hall, Bridget Deemer, Facundo Scordo, Carolina C. Barbosa, Stephanie M. Carlson, Kaelin M Cawley, Hans-Peter Grossart, Patrick T. Kelly, Stefano Mammola, Matthew R. Pintar, Caleb J. Robbins, Albert Ruhi Vidal, Mattia Sacco
2025, Ecosphere (16)
Evaluating progress toward achieving freshwater conservation and sustainability goals requires transforming diverse types of data into useful information for scientists, managers, and other interest groups. Despite substantial increases in the volume of freshwater data collected worldwide, many regions and ecosystems still lack sufficient data collection and/or data access. We illustrate...
Overwinter and prespawning movements by a vulnerable freshwater pelagophilic minnow
Desiree M. Moore, Shannon K. Brewer
2025, Scientific Reports (15)
The decline of pelagophil minnows is related to river fragmentation across the southern Great Plains landscape. Because we know little about pelagophil movement patterns and timing, we aimed to quantify the movements of the vulnerable Arkansas River shiner (ARS) during the winter (November–March) and prespawning (April–June) seasons. We tagged 4233...
Limited directional change in mountaintop plant communities over 19 years in western North America
Kaleb Goff, Meagan Ford Oldfather, Jan Nachlinger, Brian Smithers, Michael Koontz, Catie Bishop, Jim Bishop, Mary Burke, Seema Sheth
2025, Ecosphere (16)
Plant communities on mountain summits are commonly long-lived, cold-adapted perennials with low dispersal ability. These characteristics in tandem with limited area to track suitable conditions make these mountain communities potentially highly vulnerable to climate change, and indicators of climate change impacts. We investigated temporal changes in plant communities on 29...
Critical Minerals in Ores (CMiO) database
George N.D. Case, Garth E. Graham, Christopher Lawley, Evgeniy Bastrakov, David Huston, Albert H. Hofstra, Vladimir Lisitsin, Steph Hawkins, Bronwen Wang
2025, Fact Sheet 2025-3002
Critical minerals are commodities essential to modern industrial and strategic technologies and are highly vulnerable to supply chain disruption. The Critical Minerals Mapping Initiative (CMMI) is a collaboration among the U.S. Geological Survey (USGS), the Geological Survey of Canada, and Geoscience Australia that aims to deepen global understanding of where...
The effect of turbidity on foraging by prerostrum juvenile Paddlefish
Ethan Hood, James M. Long, Daniel E. Shoup, Casey A. Pennock, Andrew R. Dzialowski, Jason D. Schooley
2025, Transaction of the American Fisheries Society (154) 127-133
ObjectiveA previous study evaluating restoration success of Paddlefish Polyodon spathula suggested that excessive turbidity in lakes and rivers may inhibit foraging by juveniles prior to the development of the rostrum. Although a Paddlefish's rostrum, which contains electroreceptors, helps the fish to locate zooplankton prey, the prerostrum stage lacks...
Applying U-Th disequilbrium for dating siliceous sinters
Lauren Sankovitch, Carolina Munoz-Saez, Adam M. Hudson, Linda V. Godfrey, Jay Michael Thompson
2025, Journal of Volcanology and Geothermal Research (462)
Continental hydrothermal systems are critical avenues for the crustal transport of heat and mass captured for geothermal energy and mineral exploration. Thus, understanding their temporal evolution and longevity is important for resource characterization. Deposits of microlaminated siliceous sinter, common surface expressions of high temperature reservoirs (> 170 °C), have the potential...
Wangyanite, PdNi8S8, a new Pd end-member mineral of the pentlandite group from the J-M reef, Stillwater Complex, Montana, USA
Chen Chen, Haiyang Xian, Christopher Jenkins, Zhuosen Yao, Yiping Yang, Xiaoju Lin, Shan Li, Jiaxin Xi, Yuhuan Yuan, Jianxi Zhu, Hongping He
2025, American Mineralogist (110) 1844-1853
Wangyanite (IMA2024-008a), ideally PdNi8S8, is a Pd end-member mineral of the pentlandite group that was discovered in the J-M reef of the Stillwater Complex, Montana, USA. Wangyanite occurs as anhedral-subhedral granular crystals 200–400 µm in size, associated with isoferroplatinum, braggite, pentlandite, and chalcopyrite interstitial to plagioclase grains within anorthosite. Wangyanite exhibits...
Greater sage-grouse seasonal habitat associations: A review and considerations for interpretation and management applications
Gregory T. Wann, Ashley L. Whipple, Elizabeth Kari Orning, Megan M. McLachlan, Jeffrey L. Beck, Peter S. Coates, Courtney J. Conway, Jonathan B. Dinkins, Aaron N. Johnston, Christian A. Hagen, Paul Makela, David Naugle, Michael A Schroeder, James S. Sedinger, Brett L. Walker, Perry J. Williams, Richard D. Inman, Cameron L. Aldridge
2025, Journal of Wildlife Management (89)
Habitat features needed by wildlife can change in composition throughout the year, particularly in temperate ecosystems, leading to distinct seasonal spatial-use patterns. Studies of species-habitat associations therefore often focus on understanding relationships within discrete seasonal periods with common goals of prediction (e.g., habitat mapping) and inference (e.g., interpreting model coefficients)....
Social composition of soft‐release groups is correlated with survival of translocated gopher tortoises
Kevin J. Loope, Rebecca A. Cozad, Derek. B. Breakfield, Matthew J. Aresco, Elizabeth Ann Hunter
2025, The Journal of Wildlife Management (89)
The social structure of translocated animal populations can have important effects on the survival and reproduction of translocated individuals for both solitary and social species. The gopher tortoise (Gopherus polyphemus) is a reptile of conservation concern that is currently experiencing high levels of mitigation translocation in Florida, USA. Individuals live...
Scaling from microsite to landscape to resolve litter decomposition dynamics in globally extensive drylands
Heather L. Throop, Jiwei Li, Daryl L. Moorhead, Sasha C. Reed, Katherine Todd-Brown, Alexi Besser, Dellena Bloom, Thomas Ingalls, Alejandro Cueva
2025, Functional Ecology
1. Decomposition controls the release of carbon and nutrients from decaying plant litter into soils or the atmosphere. In most biomes decomposition rates can be accurately predicted with simple mathematical models, but these models have long under-predicted decomposition in globally- extensive drylands. 2. We posit that the exposed surface conditions...
Shortening migration by 4500 km does not affect nesting phenology or increase nest success for black brant (Branta bernicla nigricans) breeding in Arctic and subarctic Alaska
Toshio Doroff Matsuoka, Vijay P. Patil, Jerry W. Hupp, Alan G. Leach, John Reed, James S. Sedinger, David H. Ward
2025, Movement Ecology (13)
BackgroundSince the 1980s, Pacific Black Brant (Branta bernicla nigricans, hereafter brant) have shifted their winter distribution northward from Mexico to Alaska (approximately 4500 km) with changes in climate. Alongside this shift, the primary breeding population of brant has declined. To understand the population-level implications of the changing migration strategy...
Structural analysis of brittle-plastic shear zones in the Sangre de Cristo Range, southern Colorado USA: Superposition of Rio Grande rift extension on Laramide contraction
Michael C. Sitar, John S. Singleton, Jeffrey M. Rahl, Jonathan Caine, Jacob King, Andrew R C Kylander-Clark, Paul O’Sullivan
2025, Geosphere (21) 446-469
The Sangre de Cristo Range in southern Colorado exposes some of the deepest Cenozoic structural levels in the Rocky Mountain region, including mylonitic shear zones associated with both the Laramide orogeny and Rio Grande rift. We investigated the relation between Laramide contraction and Rio Grande rift extension with detailed geologic...
C4 photosynthesis, trait spectra, and the fast-efficient phenotype
Russell K. Monson, Shuai Li, Elizabeth A. Ainsworth, Yuzhen Fan, John G. Hodge, Alan K. Knapp, Andrew D.B. Leakey, Danica Lombardozzi, Sasha C. Reed, Rowan F. Sage, Melinda D. Smith, Nicholas G. Smith, Christopher J. Still, Danielle A. Way
2025, New Phytologist (246) 879-893
It has been 60 years since the discovery of C4 photosynthesis, an event that rewrote our understanding of plant adaptation, ecosystem responses to global change, and global food security. Despite six decades of research, one aspect of C4 photosynthesis that remains poorly understood is how the pathway fits into the broader context of...
Sea Lamprey control reduction during the COVID-19 pandemic corresponds to rapid increase in Sea Lamprey abundance
Benjamin Marcy-Quay, Sean Alois Lewandoski, Ryan M. Booth, Michael J. Connerton, Aaron K. Jubar, Chris D. Legard, Brian O’Malley, Scott E Prindle, Alexandra W Sumner, Matthew J. Symbal, Andy Todd, Michael J. Yuille, Ted J. Treska, Michael J. Siefkes, Nicholas S. Johnson
2025, Fisheries (50) 355-365
The Sea Lamprey Petromyzon marinus control program in the Laurentian Great Lakes is one of the longest-running and most successful invasive species suppression programs in the world. Although several techniques are used to suppress Sea Lamprey, the control program relies heavily on regular application of lampricide to kill stream-dwelling larvae. The COVID-19...
Responses of larval fish and zooplankton to whole-lake 2,4-D herbicide treatments used to control Eurasian watermilfoil in northern Wisconsin lakes
Nicholas Rydell, Justin VanDeHey, Daniel Dembkowski, Kevin Gauthier, Scott Van Egeren, Jody A. Kubitz, Terry R. Naumann, Daniel A. Isermann
2025, Hydrobiologia (852) 2769-2786
In North America, Eurasian watermilfoil Myriophyllum spicatum is one of the most widespread non-native aquatic plant species in freshwater ecosystems. Applications of 2,4-dichlorophenoxyacetic acid (2,4-D) herbicides are often utilized to control Eurasian watermilfoil. Herbicide applications may have unintended effects on non-target organisms like zooplankton and fish, but these effects are poorly understood....