Development of PCR blocking primers enabling DNA metabarcoding analysis of dietary composition in hematophagous sea lamprey
Conor O'Kane, Nicholas S. Johnson, Kim T. Scribner, Jeannette Kanefsky, Weiming Li, John D. Robinson
2025, Ecology and Evolution (15)
Conventional dietary assessments are challenging in hematophagous species, particularly in sea lamprey (Petromyzon marinus). However, recent technological developments and molecular approaches have provided an attractive alternative through the use of DNA metabarcoding. While DNA metabarcoding has been used for dietary analyses in numerous species, including lampreys, applications of universal primers...
Divergent trends in fluvial suspended-sediment concentrations following improved land-use practices, southwest Washington State
Scott W Anderson, Christopher A. Curran, Oscar Wilkerson, Katie Seguin
2025, Geomorphology (488)
Improvements in logging practices since the mid-20th century are widely presumed to have reduced suspended sediment loads in streams across the Pacific Northwest. However, there have been few opportunities to directly assess this, particularly in larger rivers. We compare modern (2019–22) and historical (1960s) suspended sediment monitoring in three large,...
Improved prediction of postfire debris flows through rainfall anomaly maps
David B. Cavagnaro, Scott W. McCoy, Matthew A. Thomas, Jaime Kostelnik, Donald N. Lindsay
2025, Geophysical Research Letters (52)
Predicting where runoff-generated debris flows might occur during rainfall on steep, recently burned terrain is challenging. Studies of mass-movement processes in unburned areas indicate that event locations are well-predicted by rainfall anomaly, R*, in which peak observed rainfall is normalized by local rainfall climatology. Here, we use remote and field methods...
Potomac Tributary Summary: A summary of trends in tidal water quality and associated factors, 1985 - 2022
Breck Maura Sullivan, Kaylyn Gootman, Alex Gunnerson, Sarah Betts, Gabriel Duran, Cindy Johnson, Christopher A. Mason, Elgin Perry, Gopal Bhatt, Jennifer L. Keisman, James S. Webber, Jon Harcum, Michael Lane, Olivia Devereux, Qian Zhang, Rebecca Murphy, Renee Karrh, Thomas Butler, Zhaoying Wei
2025, Report
The Potomac Tributary Summary outlines change over time for a suite of monitored tidal water quality parameters and associated potential drivers of those trends for the period of 1985 to 2022, and provides a brief description of the current state of knowledge explaining these observed changes. Water quality parameters described...
Evaluation of daily stream temperature predictions (1979-2021) across the contiguous United States using a spatiotemporal aware machine learning algorithm
Jeremy Alejandro Diaz, Samantha K. Oliver, Galen Gorski
2025, Environmental Modelling & Software (193)
Stream temperature controls a variety of physical and biological processes that affect ecosystems, human health, and economic activities. We used 42 years (1979–2021) of data to predict daily summary statistics of stream temperature across >50,000 stream reaches in the contiguous United States using a recurrent graph convolution network. We comprehensively...
Avian influenza spillover into poultry: Environmental influences and biosecurity protections
Matthew Brandon Gonnerman, Jennifer Mullinax, Andrew Fox, Kelly A. Patyk, Victoria Fields, Mary-Jane McCool, Mia K. Torchetti, Kristina Lantz, Jeffery D. Sullivan, Diann Prosser
2025, One Health (21)
With the continued spread of highly pathogenic avian influenza (HPAI), understanding the complex dynamics of virus transfer at the wild – agriculture interface is paramount. Spillover events (i.e., virus transfer from wild birds into poultry) are related to proximity to infected wild bird populations and environmental conditions. By accounting for...
Landscape changes elevate the risk of avian influenza virus diversification and emergence in the East Asian–Australasian Flyway
Shenglai Yin, Chenchen Zhang, Claire Stewart Teitelbaum, Yali Si, Geli Zhang, Xinxin Wang, Dehua Mao, Zheng Y.X. Huangh, Willem Frederik de Boer, John Takekawa, Diann Prosser, Xiangming Xiao
2025, Proceedings of the National Academy of Sciences (122)
Highly pathogenic avian influenza viruses (HPAIV) persistently threaten wild waterfowl, domestic poultry, and public health. The East Asian–Australasian Flyway plays a crucial role in HPAIV dynamics due to its large populations of migratory waterfowl and poultry. Over recent decades, this flyway has undergone substantial landscape changes, including both losses and...
Integrating hunter dynamics and waterfowl dynamics to inform harvest management
Richard Eugene Waggaman Berl, Patrick K. Devers, G. Scott Boomer, Michael Runge
2025, Journal of Wildlife Management
The successful conservation and management of North American waterfowl relies upon an adaptive harvest management framework that accounts for changes in the system state and critical uncertainties related to the dynamics of waterfowl populations and habitats. Increasing recognition of the importance of the human dimensions of the harvest process, particularly...
Economic costs of invasive carps in the United States: Case study and management implications
Ellie Brown, Joseph W. Snapp, Christopher Huber, James Caudill, Peter E. Grigelis
2025, Biological Invasions (27)
Biological invasions can have far-reaching impacts and incur enormous monetary costs. Economic considerations play an important role in management decision-making. We used the invasion of U.S. waterways by silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp as a case study of the costs of aquatic invasive species. Although these carps...
Evaluating the performance of multiple precipitation datasets over the transboundary Ili River Basin between China and Kazakhstan
Baktybek Duisebek, Gabriel Senay, Dennis S. Ojima, Tibin Zhang, Janay Sagin, Xuejiao Wang
2025, Sustainability (17)
The Ili River Basin is characterized by complex topography and diverse climatic zones with limited in situ observations. This study evaluates the performance of six widely used precipitation datasets, CHIRPS (Climate Hazards Group InfraRed Precipitation with Station data), ERA5_Land (European Centre for Medium-Range Weather Forecasts—ECMWF Reanalysis 5_Land), GPCC (Global Precipitation...
Evaluating elk distribution and conflict under proposed management alternatives at the National Elk Refuge in Jackson, Wyoming
Gavin G. Cotterill, Paul C. Cross, Eric K. Cole, Jonathan D. Cook, Margaret C. McEachran, Tabitha A. Graves
2025, Scientific Investigations Report 2025-5076-C
We evaluated measurable attributes describing the current and future distribution of Cervus elaphus canadensis (elk) across a region surrounding Jackson, Wyoming, for five feedground management alternatives proposed by the U.S. Fish and Wildlife Service as a revision to the 2007 “Bison and Elk Management Plan” of the National Elk Refuge....
Predictions of elk and chronic wasting disease dynamics at the National Elk Refuge in Jackson, Wyoming, and surrounding areas
Paul C. Cross, Jonathan D. Cook, Eric K. Cole
2025, Scientific Investigations Report 2025-5076-B
The U.S. Fish and Wildlife Service National Elk Refuge (NER) in Jackson, Wyoming, supplementally feeds Cervus elaphus canadensis (elk) and Bison bison (American bison) during winter months, but the costs and benefits of this management strategy are being reevaluated considering the potential effects of chronic wasting disease (CWD) on elk....
Predictions of elk, chronic wasting disease dynamics, and socioeconomics under alternative D at the National Elk Refuge in Jackson, Wyoming, and surrounding areas
Jonathan D. Cook, Gavin G. Cotterill, Eric K. Cole, Paul C. Cross
2025, Scientific Investigations Report 2025-5076-F
This chapter presents a description and quantitative evaluation of a collaborative alternative (alternative D) focused on near-term elk population reduction and chronic wasting disease (CWD) monitoring as part of winter elk and bison feedground operations on the National Elk Refuge adjacent to Jackson, Wyoming. Alternative D was developed by the...
Bison population dynamics, harvest, and human conflict potential under feedground management alternatives at the National Elk Refuge in Jackson, Wyoming
Jonathan D. Cook, Margaret C. McEachran, Gavin G. Cotterill, Eric K. Cole
2025, Scientific Investigations Report 2025-5076-D
Bison bison were once abundant across North America but declined due to overharvesting in the late 1800s. The reintroduced population in and around Jackson, Wyoming has averaged 485 individuals between 2018–2023 and is the subject of a planning process to inform management strategies that will guide the U.S. Fish and...
Low genetic diversity in populations of a clonal invasive plant limits sexual reproduction
Ian S. Pearse, Zoe Becker, Paul J. Ode, John F. Gaskin, Natalie West
2025, American Journal of Botany (112)
PremiseClonality, a form of asexual reproduction and spread, is common among invasive plants, though sexual reproduction via seeds is often still important for their long-range dispersal. In small populations, clonality has been hypothesized to interfere with sexual reproduction by limiting outcrossing opportunities of a plant.MethodsWe developed a structural equation model...
Magnitude, depth and methodological variations of spectral stress drop within the SCEC/USGS Community Stress Drop Validation Study using the 2019 Ridgecrest Earthquake Sequence
Rachel E. Abercrombie, Annemarie S. Baltay Sundstrom
2025, Bulletin of the Seismological Society of America (115) 2741-2768
We present the first ensemble analysis of the 56 different sets of results submitted to the ongoing Community Stress Drop Validation Study using the 2019 Ridgecrest, California, earthquake sequence. Different assumptions and methods result in different estimation of the source contribution to recorded seismograms, and hence to the source parameters...
Some of these are not like the others: Relative thermal sensitivity among anuran species of the Southeast United States
Traci P. Dubose, Chloe E. Moore, Vincent R. Farallo, Abigail Benson, William A. Hopkins, Samuel Silknetter, Meryl C. Mims
2025, Ecosphere (16)
Estimating how close a species is to its upper thermal limits (i.e., warming tolerance, a thermal sensitivity index) and how that proximity changes across space enables spatially explicit identification of species with increased extinction risk as temperatures increase. Yet, thermal sensitivity is often difficult to calculate because it is the...
Turning trash into treasure: Leveraging discarded filters for national-scale aquatic eDNA biomonitoring
Devin Nicole Jones-Slobodian, Daniel J. Wieferich, Noah Fierer, Joseph Crane, Adam Sepulveda
2025, Aquaculture, Fish and Fisheries (5)
Monitoring biodiversity changes over large spatiotemporal scales is critical for effective ecosystem conservation and management. This study investigates the potential of environmental DNA (eDNA) metabarcoding to enhance national-scale biomonitoring of freshwater diversity by leveraging discarded filters associated with routine water quality sampling from the U.S. Geological Survey's (USGS) National Water...
Increased soil greenhouse gas emissions from the combined use of cover crops and no‐tillage in producer‐ managed fields
Yu Peng, Pierre-Andre Jacinthe, Edward G. Dobrowolski, Lixin Wang
2025, Earth's Future (13)
Cover crop adoption offers multiple benefits and climate mitigation potential for agroecosystems, but is still an underutilized conservation practice. Recently, the combined use of cover cropping plus no-tillage (CCNT) has been increasingly promoted to achieve its synergistic effectiveness. Yet, how this combined practice affects soil greenhouse gas (GHG) emission remains...
Multi-scale habitat characteristics influence Paleback Darter occupancy and detection probability
Maxwell L. Hartman, Katie M. Morris, Jonathan J. Spurgeon, Steve E. Lochmann
2025, Transactions of the American Fisheries Society (154) 585-594
ObjectiveThe limited distribution of the Paleback Darter Etheostoma pallididorsum, which is often associated with dynamic headwater streams, makes the species vulnerable to changes in its environment in west-central Arkansas. A detailed understanding of habitat characteristics that support the species at multiple spatial scales is limited. This project assessed the relative influences...
Insights and strategic opportunities from the USGS 2024 Per- and Polyfluoroalkyl Substances (PFAS) Interagency Workshop
Deborah D. Iwanowicz, Kimberly R. Beisner, Paul M. Bradley, Patricia R. Bright, Juliane B. Brown, Christopher J. Churchill, Stephanie E. Gordon, Natalie Karouna-Renier, Dana W. Kolpin, Rebecca B. Lambert, Erin L. Pulster, Rip S. Shively, Kelly Smalling, Jeffery A. Steevens, Andrea K. Tokranov
2025, Open-File Report 2025-1044
Introduction In 2021, the U.S. Geological Survey (USGS) published Circular 1490 titled, “Integrated Science for the Study of Perfluoroalkyl and Polyfluoroalkyl Substances (PFAS) in the Environment: A Strategic Science Vision for the U.S. Geological Survey” (Tokranov and others, 2021). Circular 1490 was created to be a resource for USGS scientists prioritizing...
anadrofish: Anadromous fish population responses to dams
Daniel S. Stich, Joshua D. Hardesty, Nicholas T. Jordan, Samuel G. Roy, Timothy F. Sheehan, Shawn D. Snyder, Joseph D. Zydlewski
2025, Journal of Open Source Software (10)
Diadromous fishes world-wide experienced precipitous declines during the 19th and 20th centuries due to a combination of overfishing, pollution, and freshwater habitat loss through construction of dams (Limburg & Waldman, 2009). Following wide-spread fishing closures and large-scale remediation of many historical pollution sources, dams in coastal rivers remain as the...
Remote sensing of chlorophyll a and temperature to support algal bloom monitoring in Blue Mesa Reservoir, Colorado
Tyler V. King, Robert Allen Bean, Katherine Walton-Day, M. Alisa Mast, Evan J. Gohring, Rachel G. Gidley, Natalie K. Day, Nicole D. Gibney
2025, Journal of the American Water Resources Association (61)
We present methods to reconstruct historical chlorophyll a and surface water temperatures from satellite-based remote sensing products for Blue Mesa Reservoir, Colorado, to support algal bloom monitoring. A machine learning model was trained to construct chlorophyll a concentrations from Sentinel-2 satellite imagery and in situ measurements of chlorophyll a concentrations (out of bag RMSE = 1.9 μg/L, R2 = 0.63) and reconstruct summertime...
Overcoming challenges in mapping hydrography and heterogeneity in urban landscapes
Kristina G. Hopkins, Rebecca L. Hale, Krista A. Capps, John S. Kominoski, Jennifer L. Morse, Allison H. Roy, Andrew Blinn, Shuo Chen, Liz Ortiz Muñoz, Annika Quick, Jacob Rudolph
2025, Hydrological Processes (39)
Understanding how water moves through a watershed is one of the most fundamental yet often complicated aspects of hydrology, especially in urban areas. Urban infrastructure and water management alter natural hydrological pathways in developed watersheds, which can violate assumptions of a watershed approach to ecosystem science. We focus on two...
Dynamic feedbacks between river meandering and landsliding in northwestern Washington glacial terraces
Shelby Marie Ahrendt, Benjamin Mirus, Sean Richard LaHusen, Jonathan Patrick Perkins
2025, JGR Earth Surface (130)
Landsliding in river valleys poses unique risks for cascading hazards and can damage infrastructure and cause fatalities. In postglacial valleys, many landslides are posited to occur in relation to lateral river erosion, but the dynamics of fluvial-hillslope interactions are not well understood. Here, we investigate a section of the Nooksack...