Effects of riparian forest thinning on resident salmonid fishes in coastal northern California catchments
David A. Roon, Jason Dunham, Joseph R. Benjamin, Bret C. Harvey, James R Bellmore
2025, Freshwater Biology (70)
Resource managers are interested in whether thinning second-growth forests may be a viable restoration strategy for stream and riparian habitats, but may be concerned about the potential impacts that increases in stream temperature associated with riparian thinning treatments may have on cold-water salmonid fishes.We evaluated the effects of riparian...
Cave records reveal recent origin of North America’s deepest canyon
Matthew Morriss, Nate Mitchell, Brian Yanites, Lydia M. Staisch, Oliver Korup
2025, Proceedings of the National Academy of Sciences (122)
We explore how and when Hells Canyon, North America’s deepest river gorge (~2,400 m deep), formed, addressing these fundamental questions first posed by W. Lindgren [The Gold Belt of the Blue Mountains of Oregon (1901)]. Existing hypotheses about the canyon’s formation and timing of incision remain speculative due to a lack...
Infrasonic directivity of monopole, dipole, and bipole ground-surface reflected sources
Alexandra M. Iezzi, Robin S. Matoza, Emma V. Opper, Keehoon Kim
2025, Geophysical Journal International (242)
Infrasound (acoustic waves below 20 Hz) can be used to detect, locate and quantify activity in the atmosphere such as volcanic eruptions and anthropogenic explosions. Attempts to quantify volcanic eruption parameters such as exit velocity, plume height and mass flow rate using infrasound data depend strongly on assumptions of the acoustic...
Cultivating reciprocity and supporting Indigenous lifeways through the cultural transformation of natural resource management in North America
Jonathan J. Fisk, Richard Eugene Waggaman Berl, Jonathan W. Long, Jacobs. Lara, Lily M. van Eeden, Melinda Adams, Álvaro Fernández-Llamazares, Jazmin Murphy, Michael C. Gavin, Chris K Williams, Jonathan Salerno, Bas Verschuuren, Nathan Bennett, Rodrigue Idohou, Alexander Mawyer
2025, People and Nature (7) 1171-1184
Recent decades have seen increasing calls for implementing Indigenous Knowledges (IK) in natural resource management (NRM). However, efforts have been limited by the cultural incommensurabilities between (1) NRM institutions, which are rooted in worldviews that prioritize extraction for dominant cultures and assume dominance over nature and (2) Indigenous worldviews...
Protected from Pterygoplichthys? Predicting thermal habitat suitability for nonnative armored catfish in the Suwannee River
Andrew Kenneth Carlson
2025, Transactions of the American Fisheries Society (154) 398-413
ObjectiveNonnative fishes can modify ecosystems and harm economies when they are introduced to new environments. Climate change is likely to assist the spread and establishment of some nonnative fishes (e.g., warmwater species), but spatiotemporal gaps in water temperature monitoring and modeling may prevent ecologists and managers from forecasting thermal habitat...
A joint Gaussian process model of geochemistry, geophysics, and temperature for groundwater TDS in the San Ardo Oil Field, California, USA
Michael J. Stephens, Will Chang, David H. Shimabukuro, Amanda Howery, Theron A. Sowers, Janice M. Gillespie
2025, Journal of Hydrology (661)
Decline in availability of fresh groundwater has expanded interest in brackish groundwater resources; however, the distribution of brackish groundwater is poorly understood. Water resources in sedimentary basins across the United States often overlie oil and gas development. Mapping of groundwater total dissolved solids (TDS) using data from oil...
Reconstructing late Pleistocene relative sea levels on transgressed shelves: An example from central California
Elisa Medri, Alexander Simms, Jared W. Kluesner, Samuel Y. Johnson, Stuart Nishenko, H. Gary Greene, James E. Conrad, Devin Rand
2025, Quaternary Science Reviews (361)
Although prevalent for the late Holocene, relative sea level (RSL) constraints during and immediately after the Last Glacial Maximum (LGM) are sparse. This scarcity of data is particularly pronounced along mid-latitude shelves such as central California, which lack post LGM RSL constraints older than 12 ka. In this study we...
The 3D Elevation Program—Supporting New Mexico’s Economy
Carol Lydic
2025, Fact Sheet 2025-3014
Introduction Federal, State, Tribal, and local entities managing lands in New Mexico have concerns about wildfire risk, wildlife habitat, and flood risk. Land managers in urban areas along the Rio Grande corridor and in the State’s rural northwest and southeast also have concerns about existing and developing roads, buildings, and other...
Managing water for birds—A tool for the Malheur National Wildlife Refuge, southeastern Oregon
Cassandra D. Smith
2025, Scientific Investigations Report 2025-5024
The “Water for Birds Tool” is a spreadsheet-based tool (using Microsoft Excel) designed to help resource managers assess the spatial extent and types of bird habitats in the Malheur National Wildlife Refuge, southeastern Oregon. The tool quantifies the areas of open water, partial water, and water depths on a monthly...
Mapping eelgrass (Zostera marina) cover and biomass at Izembek Lagoon, Alaska, using in-situ field data and Sentinel-2 satellite imagery
David C. Douglas, Michael D. Fleming, Vijay P. Patil, David H. Ward
2025, Open-File Report 2025-1007
The U.S. Geological Survey and the U.S. Fish and Wildlife Service have developed a three-tiered strategy for monitoring eelgrass (Zostera marina) beds at Izembek Lagoon, Alaska, that targets different spatial and temporal scales. The broadest-scale monitoring (tier-1) uses satellite imagery about every 5 years to delineate the spatial extent of...
Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin
Gouda V. Mennatallah, Jim Powell, Jen McClure, Daniel P. Walsh, Daniel J. Storm
2025, Bulletin of Mathematical Biology (87)
Chronic wasting disease (CWD) is a fatal neurodegenerative disease infecting cervids. It is highly contagious and caused by misfolded prions that propagate via templated conformational conversion of the cervid’s normal prion protein. Prevalence of CWD in free-ranging deer in North America is mostly low, but in some regions local prevalence...
Biocrust mosses and cyanobacteria exhibit distinct carbon uptake responses to variations in precipitation amount and frequency
Kristina E. Young, Osvaldo E. Sala, Anthony Darrouzet-Nardi, Colin L Tucker, Rebecca A Finger-Higgens, Megan Elyse Starbuck, Sasha C. Reed
2025, Ecology Letters (28)
Dryland organisms exhibit varied responses to changes in precipitation, including event size, frequency, and soil moisture duration, influencing carbon uptake and reserve management strategies. This principle, central to the pulse-reserve paradigm, has not been thoroughly evaluated in biological soil crusts (biocrusts), essential primary producers on dryland surfaces. We conducted two...
Calibration of the Stream Salmonid Simulator (S3) model to estimate annual survival, movement, and food consumption by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the restoration reach of the Trinity River, California, 2006–18
John M. Plumb, Russell W. Perry, Kyle De Juilio
2025, Open-File Report 2024-1070
Executive SummaryThe Trinity River is managed in two sections: (1) from the upper 64-kilometer “restoration reach” downstream from Lewiston Dam to the confluence with the North Fork Trinity River, and (2) the 120-kilometer lower Trinity River downstream from the restoration reach. The Stream Salmonid Simulator (S3) has been previously applied...
New technology for an ancient fish: A lamprey life cycle modeling tool with an R Shiny application
Dylan Gerald-Everett Gomes, Joseph R. Benjamin, Benjamin J. Clemens, Ralph Lampman, Jason Dunham
2025, PLoS ONE (20)
Lampreys (Petromyzontiformes) are an ancient group of fishes with complex life histories. We created a life cycle model that includes an R Shiny interactive web application interface to simulate abundance by life stage. This will allow scientists and managers to connect available demographic information in a framework that can be...
Regional analysis of the dependence of peak-flow quantiles on climate with application to adjustment to climate trends
Thomas M. Over, Mackenzie K. Marti, Hannah Lee Podzorski
2025, Hydrology (12)
Standard flood-frequency analysis methods rely on an assumption of stationarity, but because of growing understanding of climatic persistence and concern regarding the effects of climate change, the need for methods to detect and model nonstationary flood frequency has become widely recognized. In this study, a regional statistical method for estimating...
The Hardscrabble Creek complex: A newly discovered, mostly buried, Mesoproterozoic mafic-ultramafic pluton in the Wet Mountains, Colorado, USA
Benjamin Patrick Magnin, Sandra S. Brake, Yvette Kuiper, Michael T. Mohr, Richard E. Hanson
2025, GSA Bulletin (137) 4558-4574
The origin of prolific ca. 1.4 Ga ferroan magmatism between the southwestern USA and eastern Canada is enigmatic and has been explained by various models, including extensional, mantle plume, and convergent plate-margin models. Rare mafic plutons are associated with the ferroan plutons, which may help constrain their mantle source and...
Paleo-scours within the layered sulfate-bearing unit at Gale crater, Mars: Evidence for intense wind erosion
A.L. Roberts, S. Gupta, S.G. Banhan, A. Cowart, Lauren A. Edgar, W. Rapin, W.E. Dietrich, E.S. Kite, J.M. Davis, G. Caravaca, C.A. Mondro, P.J. Gasda, J.R. Johnson, Stéphane Le Mouélic, D.M. Fey, A.B. Bryk, G. Paar, R.A. Harris, A. Fraeman, A.R. Vasavada
2025, JGR Planets (130)
The surface of modern Mars is largely shaped by wind, but the influence of past wind activity is less well constrained. Sedimentary rocks exposed in the lower foothills of Aeolis Mons, the central mound within Gale crater, record a transition from predominantly lacustrine deposition in the Murray formation to aeolian...
Fine-resolution satellite remote sensing improves spatially distributed snow modeling to near real time
Graham A. Sexstone, Garrett Alexander Akie, David J. Selkowitz, Theodore B. Barnhart, David M. Rey, Claudia León-Salazar, Emily Carbone, Lindsay A. Bearup
2025, Remote Sensing (17)
Given the highly variable distribution of seasonal snowpacks in complex mountainous environments, the accurate snow modeling of basin-wide snow water equivalent (SWE) requires a spatially distributed approach at a sufficiently fine grid resolution (<500 m) to account for the important processes in the seasonal evolution of a snowpack (e.g., wind...
Shifting baselines of coral-reef species composition from the Late Pleistocene to the present in the Florida Keys
Lauren T. Toth, Anastasios Stathakopoulos, Scarlette Shan-Hwei Hsia, David A. Weinstein
2025, The Depositional Record (11) 893-916
The ongoing global-scale reassembly of modern coral reefs is unprecedented compared with the observed stability of most late Quaternary reef assemblages. One notable exception is the marine isotope stage (MIS) 5e (ca 130–116 thousand years ago [ka]) reefs in the Florida Keys, where the ubiquitous shallow-water coral, Acropora palmata, was near absent....
Using the D-Claw software package to model lahars in the Middle Fork Nooksack River drainage and beyond, Mount Baker, Washington
Cynthia A. Gardner, Mary Catherine Benage, Charles M. Cannon, David L. George
2025, Scientific Investigations Report 2024-5133
Lahars, or volcanic mudflows, are the most hazardous eruption-related phenomena that will affect communities living along rivers that originate on Mount Baker. In the past 15,000 years, the largest lahars from Mount Baker have affected the Middle Fork Nooksack River drainage and beyond. Here we use the physics-based D-Claw software...
The feasibility of using lidar-derived digital elevation models for gravity data reduction
Jacob T. Murchek, Benjamin J. Drenth, James J. Reitman, Eric D. Anderson, Benjamin Patrick Magnin, James M. DeGraff
2025, Open-File Report 2025-1019
Gravity data require submeter elevation accuracy for data processing, and differential global navigation satellite system (dGNSS) equipment is commonly used to acquire three-dimensional positional data to achieve such accuracy. However, lidar (light detection and ranging) data are commonly used to develop digital elevation models (DEMs) of Earth’s surface. Therefore, using...
Antigone canadensis (Sandhill Crane) foraging patterns influenced by crop type, roost distance, and tillage intensity during spring and autumn migration at a primary stopover area
Rachel A. Vanausdall, William L. Kendall, Daniel P. Collins
2025, Ornithological Applications (127)
The San Luis Valley in Colorado, USA, an agriculturally dominated stopover area, is used by the Rocky Mountain population of Antigone canadensis tabida (Greater Sandhill Crane) and some midcontinental individuals of A. c. canadensis (Lesser Sandhill Crane) during migration. While the numbers of both subspecies are stable, the effects of continued water scarcity and...
Nature-based solutions extend the lifespan of a regional levee system under climate change
Rae M. Taylor-Burns, Borja G. Reguero, Patrick L. Barnard, Michael W. Beck
2025, Nature Scientific Reports (15)
Nature-based solutions are receiving increasing attention as a cost-effective climate adaptation strategy. Horizontal levees are nature-based adaptation solutions that include a sloping wetland habitat buffer fronting a levee. They can offer a hybrid solution to reinforce traditional levees in estuarine areas—plants on the horizontal levee can provide wave attenuation benefits...
Global methane budget 2000-2020
Marielle Saunois, Adrien Martinez, Benjamin Poulter, Zhen Zhang, Peter A. Raymond, Pierre Regnier, Josep G. Canadell, Robert B. Jackson, Prabir K. Patra, Philippe Bousquet, Philippe Ciais, Edward J. Dlugokencky, Xin Lan, George H. Allen, David Bastviken, David J. Beerling, Dmitry Belikov, Donald R. Blake, Simona Castaldi, Monica Crippa, Bridget R. Deemer, Fraser Dennison, Giuseppe Etiope, Nicola Gedney, Lena Höglund-Isaksson, Meredith A. Holgerson, Peter O. Hopcroft, Gustaf Hugelius, Akihiko Ito, Atul K. Jain, Rajesh Janardanan, Matthew S. Johnson, Thomas Kleinen, Paul B. Krummel, Ronny Lauerwald, Tingting Li, Xiangyu Liu, Kyle C. McDonald, Joe R. Melton, Jens Mühle, Jurek Müller, Fabiola Murguia-Flores, Yosuke Niwa, Sergio Noce, Shufen Pan, Robert J. Parker, Changhui Peng, Michel Ramonet, William J. Riley, Gerard Rocher-Ros, Judith A. Rosentreter, Motoki Sasakawa, Arjo Segers, Steven J. Smith, Emily H. Stanley, Joël Thanwerdas, Hanqin Tian, Aki Tsuruta, Francesco N. Tubiello, Thomas S. Weber, Guido R. van der Werf, Douglas E. Worthy, Yi Xi, Yukio Yoshida, Wenxin Zhang, Bo Zheng, Qing Zhu, Qiuan Zhu, Qianlai Zhuang
2025, Earth System Science Data (17) 1873-1958
Understanding and quantifying the global methane (CH4) budget is important for assessing realistic pathways to mitigate climate change. CH4 is the second most important human-influenced greenhouse gas in terms of climate forcing after carbon dioxide (CO2), and both emissions and atmospheric concentrations of CH4 have continued to...
Small waterbodies of large conservation concern: Towards an integrated approach to more accurately measuring surface water dynamics
Owen P. McKenna, Audrey Claire Lothspeich, Sara Vacek, Dawn MacDonald, Josh D. Eash, Melanie K. Vanderhoof, Elyssa C. McCulloch, Caryn D. Ross, Sadia Sabrina, Joseph F. Knight
2025, Ecological Indicators (175)
Millions of small waterbodies are dispersed throughout the middle of the North American continent, and billions of dollars have been invested to conserve, restore, and manage these waterbodies in the 20th and 21st centuries. Small waterbody conservation has been supported by different stakeholders aiming at improving water quality, enhancing floodwater...
